Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02378 ATGGCTCTCTCAGATTCTTCTCGCCGTAACAACACTCTGATCCCTTCTTTTCTTTACGGTTCTTCACCCAAAACCCTACCTCTTCACCAGATCCTCAGCTCCGGCGCGTCCTCCTCCGCCATCGGCGGCGGATCGCCCGGGAATGGACTCATGATTCCGTCTCCCAGCGAGCCTGGCAAGATCGAGATGTACTCGCCGGCGTTCTACGCCGCCTGTACCGCCGGTGGAATCCTCAGCTGTGGTCTCACTCACATGGCTGTCACTCCTCTTGACCTCGTCAAGTGTAACATGCAGATTGATCCTGCTAAGTACAAGAGCATCTCGTCTGGGTTTGGTGTTTTGCTTAAGGAGCAGGGAGTGAGGGGCTTTTTCCGTGGATGGGTGCCTACCTTGCTTGGTTACAGTGCACAGGGAGCTTGCAAGTTTGGGTTCTATGAGTTCTTTAAGAAGTACTATTCTGATATTGCTGGCCCAGAGTATGCAGCCAAGTACAAGACCTTGATCTACCTTGCTGGTTCGGCATCTGCTGAGGTTATTGCTGATGTTGCACTTTGCCCCTTTGAGGCCGTGAAGGTCCGTGTCCAAACTCAGCCTGGTTTTGCCAGAGGTCTGGGTGATGGTTTACCGAAATTCGTCAAATCTGAAGGAACCATGGGGCTGTACAAGGGATTAGTGCCTCTGTGGGGACGTCAGATTCCATACACAATGATGAAGTTTGCTTCTTTTGAGACCATTGTTGAGATGATCTATAAGCATGCCATCCCCACCCCAAAGAATGAGTGCAGCAAAAATCTGCAACTCGGTATCAGTTTTGCTGGTGGATATGTTGCTGGTGTATTTTGTGCAATTGTTTCCCATCCTGCTGATAATCTTGTCTCTTTTCTGAACAATGCCAAAGGAGCAACCGTTGGTGATGCGGTGAAGAAGCTTGGTTTGTTGGGTCTCTTTACCCGTGGTCTCCCTCTCCGTATTGTTATGATTGGAACACTTACTGGTGCCCAGTGGGGAATATACGATGCATTCAAAGTCTTTGTGGGACTGCCAACCACCGGTGGTGCTGCTCCTGCTGCTGTTCCTGCTCCTGCTGCGGAGCTTGCAAAGTCATAG 1107 0.505 MALSDSSRRNNTLIPSFLYGSSPKTLPLHQILSSGASSSAIGGGSPGNGLMIPSPSEPGKIEMYSPAFYAACTAGGILSCGLTHMAVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGVRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSEGTMGLYKGLVPLWGRQIPYTMMKFASFETIVEMIYKHAIPTPKNECSKNLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGAAPAAVPAPAAELAKS* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02378 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 67 151 IPR018108 -
Rops8g02378 368 SUPERFAMILY Mitochondrial carrier 70 340 IPR023395 -
Rops8g02378 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 265 344 IPR018108 -
Rops8g02378 368 Pfam Mitochondrial carrier protein 70 153 IPR018108 -
Rops8g02378 368 Pfam Mitochondrial carrier protein 168 252 IPR018108 -
Rops8g02378 368 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 57 355 IPR044677 GO:0005315|GO:1990547
Rops8g02378 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 164 248 IPR018108 -
Rops8g02378 368 Gene3D Mitochondrial carrier domain 67 345 IPR023395 -
Rops8g02378 368 FunFam Phosphate carrier protein, mitochondrial 67 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02378 Rops-Chr8 55082782 55086338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02378 10 368 Chloroplast and Mitochondria Gene Families AT5G14040 79.625 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02378 K15102 - gmx:548006 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02378 8 55082782 55086338 Rops8g02378 8 55082782 55086338 ECH
Rops8g02378 8 55082782 55086338 Rops5g01895 5 40114443 40122133 PCT