Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02377 ATGATGATGGATCAGCGACAGCGAGAGAAGCTGCTTCAGAAAACCGAGGCCTCTGGTTTGGAGGCAGGTGTTGGAGCTGAGCTTGGACTTGTCACCATGTCAGGGGACAACAACGACAACAAGAACAAGATGATAACTCACGGGTCGGGTCGGATCCATGATCACAGCCACCTTGGCCTCGTTGGTTCTGTTACCAACTTCGGAAATGTTCACAGGAAGAAAAGGATGGCTAGGCAGAGAAGGTTCATCACCACCACCACCAACAACAACAACAACCCCACTTCAATCACCAAGCTCTCTCGTCCTTCTAGCTCCTCCTCGCACGTGCCACCCTCCTCACTTCCATCTCATACAACTCTCCCTCCAGCACGTGAAATCGATCATACAAGGTTGAGATTCCTTTTCCAGAAGGAGTTGAAGAACAGTGATGTTAGCACCCTTAGGAGAATGATATTGCCAAAGAAATCAGCAGAGGCTTTCCTTCCTTCCCTTGAGTCAAAGGAGGGAATTCTTATCAACATGTATGATCTAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAATAACAATAGTCGGATGTATGTACTTGAGAACACTGGAGACTTTGTTAACACACATGGCCTGCAGTTTGGAGATTCCATTATGGTTTACCAAGATCTTCAAAACCATGATTATGTTATTCAGGCAAAAAAGGCTACTGATCAGGATGAATTTTTGGAAGAAACTAGTGATACCATGAATGATATCTTCCTTAATGATTATGAGGTGAACAAACCTGATTACTTCAATGTAACCTATCCTCCAGTGAATGATACAGGCATGTCATTCATATATGAGACTACCTTCTCAAATGACTCTCCACTTGATTTTTTGGGTGGATCAATGACCAATTTTTCAAGGATTGGACCAGTTGAAACCTTTGGTTCTGTTGAGAATTTGTCACTTGATGACTTCTATTAA 972 0.4321 MMMDQRQREKLLQKTEASGLEAGVGAELGLVTMSGDNNDNKNKMITHGSGRIHDHSHLGLVGSVTNFGNVHRKKRMARQRRFITTTTNNNNNPTSITKLSRPSSSSSHVPPSSLPSHTTLPPAREIDHTRLRFLFQKELKNSDVSTLRRMILPKKSAEAFLPSLESKEGILINMYDLDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNTHGLQFGDSIMVYQDLQNHDYVIQAKKATDQDEFLEETSDTMNDIFLNDYEVNKPDYFNVTYPPVNDTGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDFY* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02377 323 CDD B3_DNA 133 235 IPR003340 GO:0003677
Rops8g02377 323 MobiDBLite consensus disorder prediction 82 122 - -
Rops8g02377 323 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 70 243 IPR044800 GO:0003700
Rops8g02377 323 Pfam B3 DNA binding domain 135 223 IPR003340 GO:0003677
Rops8g02377 323 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Rops8g02377 323 Gene3D - 131 249 IPR015300 -
Rops8g02377 323 SMART B3_2 135 237 IPR003340 GO:0003677
Rops8g02377 323 MobiDBLite consensus disorder prediction 82 114 - -
Rops8g02377 323 SUPERFAMILY DNA-binding pseudobarrel domain 133 225 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02377 Rops-Chr8 55059908 55063650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02377 45 323 B3 DNA Binding Superfamily AT3G26790 50.476 9.93e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g02377 B3 6.9e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02377 K09287 - gmx:100783961 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02377 8 55059908 55063650 Rops8g02377 8 55059908 55063650 ECH