Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02369 ATGCCGTTTCCCTGTGACTACTGTGACTCCAAAAGCGCCGTGCTGTTTTGCAAAGCAGACTCCGCTAAGCTATGCTTGTTTTGCGACCAGCACGTGCACTCCGCCAACGCGCTCTCCCTCAAGCACGTGCGATACCAGATTTGCGATAATTGCAAAAACGACACCGCTACGGTTCGTTGCTCCACCGAGAATCTCGTCCTCTGTAACCGCTGCGATTGGGATGCACACGGCGGAGGGGACGACTCTCCGGCGCTTCACCACCAACACCAGCGCCACCGTCTCGAGGGACTCTCCGGCTGTCCCTCCGTTCTCGAGATTGCGTCGGCCCTAGGGCTTGATTTTAAGTCCAATGGTTCGGTAACTGAATTTGAGGGTCCTGTGGTTCCTGTTGTTTCGTTGGCTTCGAAGAATCAGAGCTTGATTAGTGGGAAGCATAAGGATGAGGTGTATGAACAGGTGGTGGAAATTGCGAGAAAGAGGAAGAATCTAGAAGGAGGAAATTGCGATGTTGAATTTGAATTCAATGATAGTAACGATGTTGATGACTTCTTGTTGCAGCAAACTCCGTTTACTTCTTTGCTTGCTTTGCCATCGGATTTTGATGTTGATGGAACTGAAACAGGGGATCTTGTCTGGAATTGTAATCCCCAATATCAGCCTCCTCAGGTGTGGGATTTTCAATTACAGAAATCAAGAGATTGCGATGAACCAAGAGTGGTGACATTTGATGGTCCAGAAGAAGCTTCCCTGTCAAAACTGAAATCATTGCAAGATGTGCACACTATAAATTGCTCAATAATTGGTGATGATATTTTATCTAGAAATAATCAATCGGATCAGTCATCAACAAGTCATGTGAAGAAGAAAGAAGAAAGCAACAAGAAAACTAGAGGTGGGTTATCATCAGAGTCCAAAATGATTGAATCCATAACATACAGTGGCACCAACAAGGTTGCAGTCATGGAGCATCTTGTGAGTGGGAGTGAAAACGTTAGCACCATAAAAGCCAAAGTTAGCTTGGAAGAGCTAGCAAAGAATAGAGGGGATGCCATGTTACGGTACAAGGAGAAGAAGAAAACCAGAAGGTACGATAAGCATATTCGCTATGAATCAAGGAAAGCCAGGGCTGATACTAGAAAGAGGGTGAGAGGGCGATTTGTGAAGGCTAGTGATTCAACTGATGTTCAAGCTTGCTGA 1197 0.4586 MPFPCDYCDSKSAVLFCKADSAKLCLFCDQHVHSANALSLKHVRYQICDNCKNDTATVRCSTENLVLCNRCDWDAHGGGDDSPALHHQHQRHRLEGLSGCPSVLEIASALGLDFKSNGSVTEFEGPVVPVVSLASKNQSLISGKHKDEVYEQVVEIARKRKNLEGGNCDVEFEFNDSNDVDDFLLQQTPFTSLLALPSDFDVDGTETGDLVWNCNPQYQPPQVWDFQLQKSRDCDEPRVVTFDGPEEASLSKLKSLQDVHTINCSIIGDDILSRNNQSDQSSTSHVKKKEESNKKTRGGLSSESKMIESITYSGTNKVAVMEHLVSGSENVSTIKAKVSLEELAKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKASDSTDVQAC* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02369 398 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515
Rops8g02369 398 SMART bboxneu5 1 47 IPR000315 GO:0008270
Rops8g02369 398 ProSiteProfiles Zinc finger B-box type profile. 5 47 IPR000315 GO:0008270
Rops8g02369 398 ProSiteProfiles Zinc finger B-box type profile. 43 97 IPR000315 GO:0008270
Rops8g02369 398 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 391 - -
Rops8g02369 398 MobiDBLite consensus disorder prediction 283 298 - -
Rops8g02369 398 Pfam CCT motif 347 389 IPR010402 GO:0005515
Rops8g02369 398 CDD Bbox1_BBX-like 4 47 - -
Rops8g02369 398 MobiDBLite consensus disorder prediction 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02369 Rops-Chr8 54911970 54915670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02369 5 391 C2C2-CO-like Transcription Factor Family AT2G33500 39.141 1.66e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Rops8g02369 CCT 9.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02369 - - aprc:113862926 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02369 8 54911970 54915670 Rops8g02369 8 54911970 54915670 ECH