Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02361 ATGGGGAGGAATCTCATAAGCTATGATATGGATGAGAACCTGAGATTGCCTGTGGGGTATATCTTTGATCCCACAGATGAGGTTCTTGTCGATTACTACTTGAAGAAGGCAGTATTTGATAAAACACCTGATACTGAAATCATCCCAGCATATGATGTGTTCCAGATGGAACCATGGAAGCTACCCGGAGGTGGCAAGTTTTACAAAGGGCAGAAGTTTTTTTTCTGCCCTGTGATTGAAATCTGTGACACCAAAGCTGCTGGGACTGGTCAGTGGAGAGCAGTAGAAAAAGGAAAAGAAATTGCTGCTCCAGCAAATAGACCAACAATTGGGAAGAGGGACACACTGATTTTCTGGGATGGACAAGGTAGCCAAACAAATTGGATTATGCATGAGTTTCGACTTGTATCAAGAATTGATCCATCTAAGATGTCAAGGTTGGCTGTGTATCGCATATTTCAGAAGGAGGAGGCAAGAAAGGTGAAGAAGGCAAAAGGGTGGGAGTGTCTCCAACCCACTGTCATAGATTTCACTGTGGAGAGTGGCAGTACCTCAGGCCCACCCTCACCTTCATCCCCATGA 582 0.4485 MGRNLISYDMDENLRLPVGYIFDPTDEVLVDYYLKKAVFDKTPDTEIIPAYDVFQMEPWKLPGGGKFYKGQKFFFCPVIEICDTKAAGTGQWRAVEKGKEIAAPANRPTIGKRDTLIFWDGQGSQTNWIMHEFRLVSRIDPSKMSRLAVYRIFQKEEARKVKKAKGWECLQPTVIDFTVESGSTSGPPSPSSP* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02361 193 ProSiteProfiles NAC domain profile. 16 155 IPR003441 GO:0003677|GO:0006355
Rops8g02361 193 Pfam No apical meristem (NAM) protein 17 135 IPR003441 GO:0003677|GO:0006355
Rops8g02361 193 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 159 - -
Rops8g02361 193 SUPERFAMILY NAC domain 12 155 IPR036093 GO:0003677|GO:0006355
Rops8g02361 193 Gene3D NAC domain 25 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02361 Rops-Chr8 54699538 54700662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02361 16 157 NAC Transcription Factor Family AT4G17980 34.810 6.78e-24 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g02361 NAM 4.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02361 - - lja:Lj1g3v3892240.1 153.295