Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02357 ATGGAGAGGAGCCCCATGGACTATGATTATAATGAGAACCTGAGATTCGGTCCCGGATGGATTTTTGATCCCACTGACGAGCATCTTGTAAATTACTACTTAAAAGAGGCGGTACTTACAAAAACACCTGATACTGACGCAATCCCAATATTTGATGTGTTCCAAATGGAACCATGGAGGCTACCAGGAGGTGGCAAGTTTTACCTGGAGAAAAAGTTTTTTTTTAGTCATGTCATTGAAATGGATGACACGAGAGTTGCTGGGACAGGCCAGTGGAGAGTAGTGGAAAAGGGAAAGGAAATTGTTGATCCAACTAATAAACTGACCATTGGAAAAAGGAACACACTGAGTTTCTGGAATGGGCAAGGTATCCAAACAAATTGGATTATGCATGAGTTCTTTCTTTCATGGAGAATTGATCCATCTGAGATGTCAAGCTGGGCTGTGTATCGTATATTTCAGGCTTTTTTCCACAAATGCCCCTATTTGAAAATCGAATTCTCAAAATACCCCCCTTCCCAAAATAATTCTCAAACTACCCCTGTTTTGGCCACGCGGGCCGGTCAACATTCCGCGGGGGTCAATTCGCCTAACGGTTAG 600 0.43 MERSPMDYDYNENLRFGPGWIFDPTDEHLVNYYLKEAVLTKTPDTDAIPIFDVFQMEPWRLPGGGKFYLEKKFFFSHVIEMDDTRVAGTGQWRVVEKGKEIVDPTNKLTIGKRNTLSFWNGQGIQTNWIMHEFFLSWRIDPSEMSSWAVYRIFQAFFHKCPYLKIEFSKYPPSQNNSQTTPVLATRAGQHSAGVNSPNG* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02357 199 PANTHER NAC TRANSCRIPTION FACTOR 56 18 154 - -
Rops8g02357 199 Gene3D NAC domain 25 157 IPR036093 GO:0003677|GO:0006355
Rops8g02357 199 ProSiteProfiles NAC domain profile. 16 155 IPR003441 GO:0003677|GO:0006355
Rops8g02357 199 Pfam No apical meristem (NAM) protein 18 133 IPR003441 GO:0003677|GO:0006355
Rops8g02357 199 SUPERFAMILY NAC domain 13 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02357 Rops-Chr8 54626145 54627096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02357 18 154 NAC Transcription Factor Family AT5G53950 32.667 1.31e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g02357 NAM 5.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02357 - - lja:Lj6g3v0227250.1 155.992