Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02356 ATGGAGAGGAATCCCATGGACTATGATTATGATGAGAACCTGAGATTCGGTCCAGGGTGGATTTTTGATCCAACTGATGAGTATCTTGTAAATTACTACTTGAAGAAGGCGGTATTTGCTAAAACACCAGATACTGATGTAATCCCGATATTTGATGTGTTTCAGATGGAACCATGGAGGTTGCCAGGAGGTGGCAAGTTTTACGTGGAGCAAAAGTTCTTTTTCTGTCGTGTGATTGAAATGGCTGACACCAGAACAGCTGGGACCGGCCAGTGGAGAGTTGTGGAAAAGGAGAAAGAAATTGCTGATCAAGTGAATAAACTGACATTTGGGAAGAGGAACATGCTGATTTTCATAGATGGGCAAGGTAGAGAAACAAATTGGATTATGCATGAGTTCCGTCTTGCATGGAGATCTGATCCATCAAAGATGTCAAGCTTGGCTATATATCGGATATTTCAGAAGGAGGCGAAGAAGGTAAAAGGGAGGGAAGGTCTCCAACCCACTGTCATAGAGCTCACAATGGAGAGTGGCAGTACTTCAGGCCCCCCTTTATCCCCGTGA 564 0.4415 MERNPMDYDYDENLRFGPGWIFDPTDEYLVNYYLKKAVFAKTPDTDVIPIFDVFQMEPWRLPGGGKFYVEQKFFFCRVIEMADTRTAGTGQWRVVEKEKEIADQVNKLTFGKRNMLIFIDGQGRETNWIMHEFRLAWRSDPSKMSSLAIYRIFQKEAKKVKGREGLQPTVIELTMESGSTSGPPLSP* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02356 187 PANTHER NAC TRANSCRIPTION FACTOR 56 18 160 - -
Rops8g02356 187 SUPERFAMILY NAC domain 13 155 IPR036093 GO:0003677|GO:0006355
Rops8g02356 187 Gene3D NAC domain 25 160 IPR036093 GO:0003677|GO:0006355
Rops8g02356 187 ProSiteProfiles NAC domain profile. 16 155 IPR003441 GO:0003677|GO:0006355
Rops8g02356 187 Pfam No apical meristem (NAM) protein 18 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02356 Rops-Chr8 54617598 54618526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02356 18 155 NAC Transcription Factor Family AT4G17980 33.548 1.12e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g02356 NAM 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02356 - - lja:Lj6g3v0227250.1 154.836