Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02354 ATGGGTCGTTGCCCTTGTTTTGGGTTGTTGTGGAGAAAGGACAAAGGGAAGAACCTCCAGGAACAAGACGAGGAAAACAAGAACCATAAATCTGAAGGGTCTGTCCCTGAAAGATCTTCAGGAGCAAGATTAGAAACAACTCCAACCGAGGATACTGACAGTTCTACTCCGGCTCAGATATTTACATTCCGAGAGCTTGCAACAGCAACAAAAAATTTTAGGGATGAAACCTTTATTGGGCAAGGTGGATTTGGAACTGTTTACAAAGGAAAGATTGCGAAAACGGGTCAGGTTGTAGCTGTTAAAAGACTTGATACAACTGGTCTCCAAGGGGAGAAGGAATTTCTAGTTGAGGTTCTCATGCTCTCTCTTCTACACCATTCCAACCTTGTTAACATGATTGGGTACTGTGCTGAAGGGGATCAACGTCTTCTTGTGTATGAATACATGCCTATGGGATCCTTAGAATCTCATCTCCATGATGTTTCACCTGACCAAGAACCACTTGATTGGAATACCAGAATGATGATAGCAGCTGGGGCAGCAAGAGGACTAAATTATCTGCACCATGAAGCAACGCCTACTGTTATATACAGGGATCTAAAATCATCCAACATACTATTGGATGAAGGTTTCCATCCAAAACTTTCTGATTTTGGGCTTGCAAAATTTGGTCCAACTGGAGACAAATCATATGTTGCCACTAGGGTCATGGGAACACAAGGTTACTGTGCCCCTGAGTATGCCACAAGTGGAAAATTAACAATGAGATCTGACATCTACAGTTTTGGGGTTGTGTTATTGGAGCTAATTACTGGACGTAGAGCATATGATGATACTCGAGGCCCTGAAAAACTTCTTGTTGAGTGGGCACGCCCAATATTTAGAGACAAAAGGAATTTTCCAAGATTGGTAGATCCAAGTTTGCAAGATCGTTACCCAAGATCAGGTCTAAAGATGGCTATTGAATTGGCATCCATGTGTCTTCGAGAAGAGCCACGTTACCGGCCTGATGTAGGTGATATAGTTCTAGCACTAGATTACTTATCATCCAAGAAGTATGTCCCAAAAGGATCTAGCACAGTTAGCACAATAGAGATGGAGAATGATGACTCCCCTACTGAAACATCTGTGATTTTGGCTAAAGACTCACTAAGAGAACAAGCTGTTGCAGAGGCCAGGCTGTGGGGAGAGACATGGAGACAGAGAAGACAAAGTGGCCAAAGTAGTCCAGAGGAAGCAAATAGGTAG 1251 0.4301 MGRCPCFGLLWRKDKGKNLQEQDEENKNHKSEGSVPERSSGARLETTPTEDTDSSTPAQIFTFRELATATKNFRDETFIGQGGFGTVYKGKIAKTGQVVAVKRLDTTGLQGEKEFLVEVLMLSLLHHSNLVNMIGYCAEGDQRLLVYEYMPMGSLESHLHDVSPDQEPLDWNTRMMIAAGAARGLNYLHHEATPTVIYRDLKSSNILLDEGFHPKLSDFGLAKFGPTGDKSYVATRVMGTQGYCAPEYATSGKLTMRSDIYSFGVVLLELITGRRAYDDTRGPEKLLVEWARPIFRDKRNFPRLVDPSLQDRYPRSGLKMAIELASMCLREEPRYRPDVGDIVLALDYLSSKKYVPKGSSTVSTIEMENDDSPTETSVILAKDSLREQAVAEARLWGETWRQRRQSGQSSPEEANR* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02354 416 Pfam Protein kinase domain 74 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02354 416 MobiDBLite consensus disorder prediction 17 36 - -
Rops8g02354 416 Gene3D Transferase(Phosphotransferase) domain 1 150 368 - -
Rops8g02354 416 Gene3D Phosphorylase Kinase; domain 1 37 149 - -
Rops8g02354 416 SUPERFAMILY Protein kinase-like (PK-like) 53 346 IPR011009 -
Rops8g02354 416 Coils Coil 12 32 - -
Rops8g02354 416 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Rops8g02354 416 FunFam probable serine/threonine-protein kinase RLCKVII 45 149 - -
Rops8g02354 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Rops8g02354 416 FunFam Serine/threonine-protein kinase PBS1 150 364 - -
Rops8g02354 416 ProSiteProfiles Protein kinase domain profile. 73 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02354 416 MobiDBLite consensus disorder prediction 40 58 - -
Rops8g02354 416 MobiDBLite consensus disorder prediction 17 58 - -
Rops8g02354 416 PANTHER OS07G0668900 PROTEIN 24 357 - -
Rops8g02354 416 SMART serkin_6 73 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02354 416 CDD STKc_IRAK 79 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02354 Rops-Chr8 54550922 54557250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02354 6 410 Glycoside Hydrolase AT3G07070 52.983 8.13e-150 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Rops8g02354 Pkinase 3.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02354 K13430 - gmx:100809298 640.958