Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02344 ATGATCATCGACACAACTGCATCGACTCTTTACTATAACCTTAAGAAACTCAAACTCGTATCATACTGTGTGAGGGACACAAAGGTTAATAAGGAGCTTGAGATGGAGAACGTTAATGAAAATGGTGTCCAACTTAGCGTGAAGCTAAGTGAACCAACTCTAGTTACTCCTGCAGAAGAAACAAAGAAAGGCATGTACTTCCTATCTAACCTTGACCAGAACATTGCAGTGATTGTTAGAACTGTTTATTGCTTCAAAACTGCCGAGAAAGGAAATGAAAAGGCTGGAGAAGTGATCAAGAATGCTTTGAAGAAGGTTCTTGTCCATTATTACCCTCTTGCTGGGCGGCTGAATATAAGCTCAGAGGGTAAACTCATAGTAGATTGCACAGGGGAGGGTGCCCTGTTTGTGGAGGCTGAAGCAAACTGTTCTATGGAAGAGATTGGTGACATCACTAAGCCAGACCCAGGGACTCTTGGTAAGCTGGTTTATGATATTCCTGGTGCAAAACATATTCTTCAGATGCCTCCTTTGGTTGCCCAGGTGACCAAGTTTAAATGTGGAGGCTTTGCTCTTGGGCTGTGCATGAATCACTGTATGTTTGATGGCATTGGTGCTATGGAATTTGTGAACTCTTGGGGAGAAGTAGCAAGAGACCTACCACTCTCTATCCCTCCAGTTCTAGACAGAAGCATTCTCAAAGCACGCAACGCACCTAAGATTGAGCATTTGCACCAAGAATTTGCTGACATTGAAGACAAGTCCAGCACCGATAGCTTGTATGAAGATGAGATGGTCTACAGGTCCTTCTGTTTTGATCCTGAGAAACTTAAGCAACTGAAGATGAAAGCTATGGAAGATGGTACTCTTGACTCTTGCACAACATTTGAAGTCCTCTCAGCATTTGTTTGGATAGCAAGAACCAAAGCACTGAAAATGTTGCCAGAGCAACAAACAAAGCTCCTTTTTGCTGTTGATGGAAGGGCTAAGTTTAACCCTCCTCTTCCAAAAGGGTACTCTGGCAATGGAATTGTACTAACAAATTCTGTGTGTCAAGCAGGTGAACTATCAAACGAGCCCTTCTCATATGCTGTGAGGCTCATCCAAGATGCAATCAAGATGGTAACAGACAGTTACATGAGATCAGCTATTGATTATTTTGAGGTGACAAGGACTAGGCCTTCTCTGGCTTGCACCCTTTTGATCACAACTTGGTCTAGGCTGTCCTTTCATACCACTGATTTTGGATGGGGAGAACCTGTTCTTTCAGGGCCAGTGTCATTGCCAGAAAAGGAAGTGATTTTGTTCCTTTCCCATGGCCAAGAGAGGAGGAACATCAATGTGCTTCTGGGTTTGCCTGCTCCTGTCATGAAGATCTTCCAAGATTTGATGCAGATATAA 1401 0.4333 MIIDTTASTLYYNLKKLKLVSYCVRDTKVNKELEMENVNENGVQLSVKLSEPTLVTPAEETKKGMYFLSNLDQNIAVIVRTVYCFKTAEKGNEKAGEVIKNALKKVLVHYYPLAGRLNISSEGKLIVDCTGEGALFVEAEANCSMEEIGDITKPDPGTLGKLVYDIPGAKHILQMPPLVAQVTKFKCGGFALGLCMNHCMFDGIGAMEFVNSWGEVARDLPLSIPPVLDRSILKARNAPKIEHLHQEFADIEDKSSTDSLYEDEMVYRSFCFDPEKLKQLKMKAMEDGTLDSCTTFEVLSAFVWIARTKALKMLPEQQTKLLFAVDGRAKFNPPLPKGYSGNGIVLTNSVCQAGELSNEPFSYAVRLIQDAIKMVTDSYMRSAIDYFEVTRTRPSLACTLLITTWSRLSFHTTDFGWGEPVLSGPVSLPEKEVILFLSHGQERRNINVLLGLPAPVMKIFQDLMQI* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02344 466 Gene3D - 42 247 IPR023213 -
Rops8g02344 466 Pfam Transferase family 46 463 - -
Rops8g02344 466 FunFam Spermidine hydroxycinnamoyl transferase 45 248 - -
Rops8g02344 466 FunFam Tryptamine hydroxycinnamoyl transferase 252 465 - -
Rops8g02344 466 Gene3D - 248 465 IPR023213 -
Rops8g02344 466 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 53 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02344 Rops-Chr8 54253463 54258802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02344 45 464 Monolignol Biosynthesis Gene Families AT5G48930 34.180 4.06e-80 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02344 K15400 - gmx:100804504 812.372