Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02336 ATGGCGACCTCTTTGAAGCCACCTTTTGGGTTTCGCTTCCTCAGACCACCGTTTTCCACCACTCCCTTATCCTTCTTCAAGTTCCCACCAACAACAACAGCTCACCTTCTCACTATCAACTGTGGTCACTCCTCTTTTGAAGTTAGAGATGTTAGTTATCAACCGCCGGGGACTCAGCTCAAGCTTCTGAATTCAGTTAGTTTTTCACTTCCGGAGAAAAGTTTTGGTCTGATTTTTGGACAGAGTGGAAGCGGAAAAACAACCCTCTTGCAGCTTCTTGCAGGAATAAACAAACCAACCTCTGGATCTATTTACATCCAAAAATATGGGGATGATGGAAATCCTAGTCAATCTCCAGAGCCCTTGGTGCCAGAAAGGGTTGGTATTGTCTTCCAGTTTCCAGAGAGGTATTTTGTGGCTGATAGTGTACTTGATGAGGTCACTTTTGGGTGGCCAAGGCAAAAGGGTAGCCATCAACTAAGGGAGAATCTTGCTCTAGGGCTACAGAGGGCAATTAACTGGGTTGGCTTAAGTGGGATCTCGTTGGATAAGAATCCTCACTCCCTCAGTGGTGGTTACAAACGTCGTCTTGCCTTGGCAATACAATTAGTGCAAATCCCAGATCTATTGATATTGGATGAGCCTCTTGCTGGACTTGATTGGAAAGCACGTGCAGATGTTGTGAAGCTTTTGAAGCATCTAAAGAAAGAATTAACTGTGCTAGTTGTCAGCCACGATTTGAGAGAGTTCGCAAGTCTAGTTGATCGATCATGGAGGATGGAAATGGGTGGCAACCTTAGAGAGGAGTTTCTACCATTATAA 822 0.4477 MATSLKPPFGFRFLRPPFSTTPLSFFKFPPTTTAHLLTINCGHSSFEVRDVSYQPPGTQLKLLNSVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGINKPTSGSIYIQKYGDDGNPSQSPEPLVPERVGIVFQFPERYFVADSVLDEVTFGWPRQKGSHQLRENLALGLQRAINWVGLSGISLDKNPHSLSGGYKRRLALAIQLVQIPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLREFASLVDRSWRMEMGGNLREEFLPL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02336 273 Pfam ABC transporter 63 216 IPR003439 GO:0005524
Rops8g02336 273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 271 IPR003439 GO:0005524
Rops8g02336 273 FunFam ABC transporter I family member 11 chloroplastic 35 271 - -
Rops8g02336 273 CDD ABC_cobalt_CbiO_domain1 47 263 IPR015856 GO:0005524|GO:0016020|GO:0055085
Rops8g02336 273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 263 IPR027417 -
Rops8g02336 273 Gene3D - 33 270 IPR027417 -
Rops8g02336 273 PANTHER HEAVY METAL TRANSPORTER 47 270 - -
Rops8g02336 273 SMART AAA_5 72 264 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02336 Rops-Chr8 54012481 54039136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02336 47 247 Calmodulin-binding Proteins AT2G36910 26.168 3.24e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02336 - - vun:114196181 452.981