Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02335 ATGGAAAATTATCCCATGTTGTTTCCTCGTCCTTCTTATTATTCGGTTTCAACTAGTGCTTTGGGAAGCTCTGAGCATGGTGTTAATGATTTGAATGGTCAAAGCTCAAATGCATTTCTGGGTTTGAGGCCCAGTAATAATAATGAAAGTGGCAATCATGATAATCAGAAGAAAGCTGAAGGTGGTGCTAGAGATGGGTTATTGTCTCAGATCAGTGGAAGCATTAATGTTAATGATCAACTAAGTGGGTCAAGTAGTAATAAAAAGAAAGGGGAGAAAAAGGTTAGAAAGCCTAGATATGCTTTTCAAACAAGGAGTCAAGTTGATATACTTGATGATGGTTATAGATGGAGGAAATATGGCCAAAAAGCTGTTAAAAACAACAAATTCCCAAGGAGCTACTACCGGTGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTCCAACGCCTAACCAAAGACGAAGGGGTAGTGGTAACCACATATGAGGGAGTGCACACTCACCCAATTGAGAAGACAACTGATAACTTTGAGCATATTTTGAGTCAGATGCAAATATACACTCCCTTTTGA 573 0.3962 MENYPMLFPRPSYYSVSTSALGSSEHGVNDLNGQSSNAFLGLRPSNNNESGNHDNQKKAEGGARDGLLSQISGSINVNDQLSGSSSNKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02335 190 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g02335 190 MobiDBLite consensus disorder prediction 18 61 - -
Rops8g02335 190 FunFam WRKY transcription factor 57 97 171 - -
Rops8g02335 190 Gene3D WRKY domain 95 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g02335 190 MobiDBLite consensus disorder prediction 18 52 - -
Rops8g02335 190 MobiDBLite consensus disorder prediction 75 99 - -
Rops8g02335 190 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 37 173 IPR044810 GO:0003700
Rops8g02335 190 SMART WRKY_cls 111 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g02335 190 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g02335 190 SUPERFAMILY WRKY DNA-binding domain 103 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02335 Rops-Chr8 53953759 53955928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02335 99 190 WRKY Transcription Factor Family AT5G13080 88.043 4.43e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops8g02335 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02335 - - pvu:PHAVU_001G088200g 289.656