Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02334 ATGGATTGGGACTGGAAGGAGTTAGATTGGGATCCCTCTGGGTTGGAGTTAGCTAATGGTGGTTTTGAAGGGCAGAAGAATGAAGCAGCTTCAGTGGATTTGAGGCTTGGTGAGGCTTCTGATTTGGTTGAAAAATCTGCCCCAGATACTCCTAAGGACCCAAAAGAATCAAAAACTGTGTCATCACCTTCTGGATCATCAAAAAGATCCCGTTTGCATAATGGATCACAGAACATGTCTTGCTCTGTTGATGGATGCAACTCTGACCTCAGTGATTGCAGAGAGTATCATAGGCGCCATAGGGTGTGTGAAAAGCATTCCAAAACCCCTGTTGTGTTGGTAGGGGGCAAGCAGCAGCGGTTCTGCCAGCAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGCAGGAAACGTCTTGATGGGCATAATAAGCGCAGAAGGAAACCTCAACCACCATCTCTTTTCATGGCTGCTGAGAAACTCATGTACAATTACAAAGGACCTAGAATCCTGCAGTTTGGTAGCCCTCAGACATATGCACACCCTATTATGAGAAATATGTGGCCTGCCACTACCATAACTGAAGCTGAATCTGGTTATGATCATCACCGACTTCTATATAGAATTGACAAGAATAGGCAAGAAAAAGGACACCTTCTATGGCAAGAAAATGGCCCTAAAACAGGTGATGGTGATGGAGCAATGCTTGGAGCACCCATCTGTGGTGCCATTGCTCCATCAGCAGGTGCAAAGGGCGGTTGGAAGCGCTCTTCTGATGGCAAACCTGGATCTTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAAACACAAAGCTCAGAGTTGAGTTTGGTGCAGTCCAGCATCAACTGTCCAATTCAATCTCCATCAGGAACTATGCATCTTGATACTGTGAACAAGGAGTACTCATGCTCAGAAAAGGCAAATGATAAGCCTAATGGTCCAATATTGGTTCTAGATGCAAACACAACCAACCTTCATCGTAATGGAATGCTGCAAATGGGGCCTGATGTATTGATGGAAAATGAGGGCTCACTGTCACTTCCCTTTTCTTGGGAGTAG 1107 0.4535 MDWDWKELDWDPSGLELANGGFEGQKNEAASVDLRLGEASDLVEKSAPDTPKDPKESKTVSSPSGSSKRSRLHNGSQNMSCSVDGCNSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNKRRRKPQPPSLFMAAEKLMYNYKGPRILQFGSPQTYAHPIMRNMWPATTITEAESGYDHHRLLYRIDKNRQEKGHLLWQENGPKTGDGDGAMLGAPICGAIAPSAGAKGGWKRSSDGKPGSFDSGCALYLLSTLQTQSSELSLVQSSINCPIQSPSGTMHLDTVNKEYSCSEKANDKPNGPILVLDANTTNLHRNGMLQMGPDVLMENEGSLSLPFSWE* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02334 368 MobiDBLite consensus disorder prediction 38 56 - -
Rops8g02334 368 SUPERFAMILY SBT domain 79 160 IPR036893 GO:0003677|GO:0005634
Rops8g02334 368 ProSiteProfiles Zinc finger SBP-type profile. 78 155 IPR004333 GO:0003677
Rops8g02334 368 FunFam Squamosa promoter-binding-like protein 14 72 142 - -
Rops8g02334 368 Pfam SBP domain 81 154 IPR004333 GO:0003677
Rops8g02334 368 MobiDBLite consensus disorder prediction 57 80 - -
Rops8g02334 368 Gene3D - 72 142 IPR036893 GO:0003677|GO:0005634
Rops8g02334 368 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 292 IPR044817 GO:0003677
Rops8g02334 368 MobiDBLite consensus disorder prediction 19 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02334 Rops-Chr8 53918418 53921049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02334 1 179 SBP-box Gene Family AT5G50670 44.500 1.33e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops8g02334 SBP 9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02334 - - lja:Lj1g3v3847150.1 576.244