Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02326 ATGGATGTGGAGAAGCAGAATCTGCAATCAGAGTTTCCCTACTGGAAACCGTTACCTCGCAGGTTTCGACCCGACTCTCCTTTCTTCGCACATGGCAACCTCGAACGAGAACTTCTTGCCAAACAGGTTGCCTTGGATTTAACAGAAGAGAAGCAACAACTTGAGAATTGGATACAAGAGGAAGGCAGGGAAGTCTACTGTCCCATTGTTGGTTGTGGAGCACGCTTGCCTTCTATGGAGGACTTTGAAAATCACTATAATGCAAGGCATACGGCATCCTGTTCTGTGTGTTCCAGAGTCTACCCAACATCGCGTCTGCTCAGCATACATGTATCTGAAGTGCATGATTCTTTTTTTCAGGCAAAAGTTGCACGTGGGTATGATGTGTATGAATGCTTAGTGGAAGGTTGTGGTACGAAGTTCAAAAACTACAAAAGTAGGCGGCAGCATCTGGTTGACAAGCATAAATTTCCCACCTCATTTGAATTTTTCAAGAAGGCTCAGCCTTCAAAGAAACAGAGGCTGAAGTCTCAACGCAAACAAGCTGCTCATAAAGAGGATGCTTCAGGAATGATGGAAGTGGAAAATGCAGCCATAGATGACCTTGTTTCAGCAGTCTCTAAATTGAATACTTCAGACTCCACTCCTTCCTCTATCAGTTTTGGTCGCCGCCACAAGGGCTTGTCATTTGTCCCTCGAGCTGTTCAGCGTGGAAGGGGATCAAACTCAGCATCATCCATTACAAAGAGATAA 753 0.4515 MDVEKQNLQSEFPYWKPLPRRFRPDSPFFAHGNLERELLAKQVALDLTEEKQQLENWIQEEGREVYCPIVGCGARLPSMEDFENHYNARHTASCSVCSRVYPTSRLLSIHVSEVHDSFFQAKVARGYDVYECLVEGCGTKFKNYKSRRQHLVDKHKFPTSFEFFKKAQPSKKQRLKSQRKQAAHKEDASGMMEVENAAIDDLVSAVSKLNTSDSTPSSISFGRRHKGLSFVPRAVQRGRGSNSASSITKR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02326 250 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
Rops8g02326 250 MobiDBLite consensus disorder prediction 236 250 - -
Rops8g02326 250 MobiDBLite consensus disorder prediction 230 250 - -
Rops8g02326 250 ProSitePatterns Zinc finger C2H2 type domain signature. 132 155 IPR013087 -
Rops8g02326 250 PANTHER UNCHARACTERIZED 9 238 IPR039258 -
Rops8g02326 250 SMART c2h2final6 65 90 IPR013087 -
Rops8g02326 250 SMART c2h2final6 130 155 IPR013087 -
Rops8g02326 250 SMART c2h2final6 92 115 IPR013087 -
Rops8g02326 250 MobiDBLite consensus disorder prediction 169 190 - -
Rops8g02326 250 Coils Coil 40 60 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02326 12 246 C2H2 Transcription Factor Family AT5G14140 65.714 4.14e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g02326 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02326 - - gmx:100819557 431.024