Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02306 ATGAAGTTTGAAGAAAGTACAACAATAAACAACAAAATGAAAGAAGAAGGAGTTGAAAGAGAAGAAGAAATAGACCCAGAAAGCAATCCACTGAATCAGCCACTGCTCAAAAGAAACCGGACACTGTCTTCCAGTCCACTTGCTTTGGTTGGAGAAAAGGTTTCCTACATAGAAAGCTTGGACTATGAGATAAATGAGAATGATCTATTCAAGCAAAACTGGAGAAGCAGATCAAGAGTTGAAGTATTGCAGTACATATTCTTAAAATGGTTACTGGCATTCCTTGTTGGACTTCTCACTGGTATTATAGCCACTCTCATCAATCTTGCTGTTGAGAACATTGCCGGGTACAAACTTCTGGCTGTTCTTAAATACATCCACAATGAAAGGTACCTGACGGGTTTCCTATATTTCTCGGGCATTAATTTCATTTTAACATTTGTTGCTGCTGTTCTCTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGAATACCTGAAATCAAAGCTTATCTTAATGGCGTTGATACGCCCAACATGTATGGTGCTACAACATTAATAGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGCCTAGATCTGGGAAAAGAAGGACCCTTGGTACATATAGGCAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCCGACAATTACAGGATCAAATGGCGCTGGCTTCGATATTTTAACAATGATCGCGACCGTCGGGATCTTATCACCTGTGGTGCATCTTCAGGTGTTTGTGCAGCTTTCCGGGCACCTGTGGGTGGAGTTCTGTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTTCTATGGAGAACCTTTTTTAGCACAGCTGTGGTAGTGGTAGTGCTTAGGGCCTTCATTGAAATCTGCAACTCTGGGAAATGTGGCCTTTTTGGTTCAGGAGGGCTGATCATGTTTGACGTGAGCAACGTTACTGTTAGGTACCATGTGATGGATATCATCCCTGTTGTAGTCATTGGAATCATAGGCGGAGCATTGGGAAGCCTTTATAATTATCTTCTACACAAGGTCCTCAGACTCTACAATCTCATCAATCAGAAAGGAAGAATGCATAAACTCCTCCTCAGTCTTGCAGTTGCACTCTTCACATCAGTGTGCCAATATGGTCTCCCATTCCTAGCAAAATGCACCCCTTGTGATTCAGTGAATCCAGCGTCTGAATGTCCCACCCATGGACGGTCTGGAAATTTCAAACAATTCAATTGCCCAACTGGCCACTACAATGATCTTGCTACTCTACTGCTTACAACCAATGATGAAGCTGTTCGAAACATATTCTCAACCAACACTCCTCATGAATATCAACCCTTATCCCTCCTTATTTTCTTTGCACTCTACTGCATATTAGGACTATTTACTTTTGGAATTGCTGTGCCATCTGGGCTCTTCCTCCCAATCATCCTTATGGGCTCAGGCTATGGCCGCCTTCTTGGCATCTACATGGGACCTCATACAAACATTGACCAAGGATTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTGTCCCTTTGCGTGATCTTCCTTGAACTCACCAGCAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACTGTTTCAACCCCAGTATATATGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCAGCAGTGGTTTCCCTCCATGGAGTAGAAAAGGTAGCCAATATAGTGGATGCCTTGAAAAACACTACACATAATGGTTTCCCTGTTATGGATAATGGGGTGATACCACCAGTAGGACAGGCCACTGAGGCAACACAACTGCATGGACTAATTCTAAGAGCACACCTCATCCAAGCATTAAAGAAGAAGTGGTTCTTGAAAGAGAGAAGGAGAAGAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGGAATATTGAAGAGGTGGCTATAACAAGAGAGGAAATGGAGATGTTTGTTGATCTGCATCCTCTCACCAATACAACTCCCTTTACAGTTCTAGAGAGCATATCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTTGGACTTCGCCATCTGCTTGTAGTACCCAAGTATCAGGCATCTGGGGTATCCCCTGTAATTGGGATCTTGACCAGACAGGATCTACTGGCCCACAACATTCTCACAGTCTTTCCTCACCTGGCAAAATCTAAGGGCAGAGAGAAGAGAAATTGA 2361 0.4405 MKFEESTTINNKMKEEGVEREEEIDPESNPLNQPLLKRNRTLSSSPLALVGEKVSYIESLDYEINENDLFKQNWRSRSRVEVLQYIFLKWLLAFLVGLLTGIIATLINLAVENIAGYKLLAVLKYIHNERYLTGFLYFSGINFILTFVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGSGGLIMFDVSNVTVRYHVMDIIPVVVIGIIGGALGSLYNYLLHKVLRLYNLINQKGRMHKLLLSLAVALFTSVCQYGLPFLAKCTPCDSVNPASECPTHGRSGNFKQFNCPTGHYNDLATLLLTTNDEAVRNIFSTNTPHEYQPLSLLIFFALYCILGLFTFGIAVPSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTSNLLLLPITMIVLLIAKTVGDCFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVVSLHGVEKVANIVDALKNTTHNGFPVMDNGVIPPVGQATEATQLHGLILRAHLIQALKKKWFLKERRRREEWEVREKFTWVELAEREGNIEEVAITREEMEMFVDLHPLTNTTPFTVLESISVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAKSKGREKRN* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02306 786 MobiDBLite consensus disorder prediction 1 27 - -
Rops8g02306 786 SUPERFAMILY Clc chloride channel 67 582 IPR014743 -
Rops8g02306 786 Gene3D Clc chloride channel 81 582 - -
Rops8g02306 786 PRINTS Plant CLC chloride channel signature 288 298 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops8g02306 786 PRINTS Plant CLC chloride channel signature 63 71 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops8g02306 786 PRINTS Plant CLC chloride channel signature 431 447 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops8g02306 786 PRINTS Plant CLC chloride channel signature 274 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops8g02306 786 PRINTS Plant CLC chloride channel signature 306 313 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops8g02306 786 Gene3D - 583 772 IPR046342 -
Rops8g02306 786 Pfam Voltage gated chloride channel 146 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops8g02306 786 SMART cbs_1 716 769 IPR000644 -
Rops8g02306 786 SMART cbs_1 602 661 IPR000644 -
Rops8g02306 786 Pfam CBS domain 715 765 IPR000644 -
Rops8g02306 786 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 27 771 - -
Rops8g02306 786 SUPERFAMILY CBS-domain pair 584 766 IPR046342 -
Rops8g02306 786 PRINTS Chloride channel signature 567 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops8g02306 786 PRINTS Chloride channel signature 529 548 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops8g02306 786 PRINTS Chloride channel signature 158 175 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops8g02306 786 PRINTS Chloride channel signature 253 272 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops8g02306 786 PRINTS Chloride channel signature 479 499 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops8g02306 786 PRINTS Chloride channel signature 511 527 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops8g02306 786 PRINTS Chloride channel signature 189 208 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops8g02306 786 CDD CBS_pair_voltage-gated_CLC_euk_bac 600 767 - -
Rops8g02306 786 ProSiteProfiles CBS domain profile. 713 779 IPR000644 -
Rops8g02306 786 FunFam Chloride channel ClC3 81 404 - -
Rops8g02306 786 MobiDBLite consensus disorder prediction 1 35 - -
Rops8g02306 786 CDD ClC_6_like 58 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02306 Rops-Chr8 53046450 53057787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02306 25 781 Ion Channels AT3G27170 80.105 0.0 1242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02306 K05016 - gmx:100788620 1393.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02306 8 53046450 53057787 Rops8g02306 8 53046450 53057787 ECH
Rops8g02306 8 53046450 53057787 Rops5g01787 5 37418228 37425068 PCT