Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02302 ATGGAGGCAGCGTCTGGGCCCCACTTCTCTGGCCTCAGACTCGATGGCCTGTTACCTTCTTCTTCTCCAACCTCTTCTCTTCCCACTCCCGATTCAACCCTAGCCCCTGATTCTCTCCCCAATCAACCCTTCGTCATTGGTGTTTCCGGTGGTACTGCCTCTGGAAAAACCACCGTTTGCGACATGATCATTCAGCAACTTCACGACCACCGTGTCGTCCTCGTCAATCAGGATTCGTTTTATCGTGGGTTGAGACCTGAAGAATTGGAACGCGTTCACGAGTACAATTTTGACCACCCTGATGCTTTTGACACTGAGCAACTGTTAGAGTGCATGAAGAAGCTCATAAGTGGCCAGAGGGTTCAAGTCCCCATTTATGACTTCAAGAAGCACCAACGCTCTTCTGATAGTTTTCGTCAGGTCAATGCCTCGGATGTCATTATCTTGGAGGGAATTCTTGTATTCCATGATCAAGGTGTCAGGGATCTGATGAACATGAAAATCTTTGTTGACACAGATGCTGATGTGCGGCTTGCTCGTAGAATTAGACGTGACACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAGTTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAGAAGTATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATCTCCGCACAAAGCTTGGTCAACATGATCTATGCAAAATATATCCAAACGTGTATGTTATTCAGTCTACATTCCAGATAAGGGGGATGCATACATTGATCCGTGACCGAGACATATCCAAGCATGATTTTGTATTTTATTCAGATCGACTTATTCGCCTGGTTGTTGAGCATGGTCTTGGTCATCTGCCTTTCACTGAAAAGCAAGTGGTTACTCCAACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAGAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGTAAAGGCATTAAAATTGGAAAAATTCTTATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAGAAGCTTCCTAAGGATATATCAGAACGACATGTCTTGCTTCTTGATCCTGTCCTTGCTACAGGTAACTCGGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAATCTCACATCATATTCCTGAATCTCATTTCTGCTCCAGAGGGAATCCATTGTGTGTGTAAAAGGTTCCCATCATTGAAAATTGTCACATCTGAGATTGATGTTGCATTAAATGAAGAGTTCCGTGTTATCCCGGGATTGGGTGAGTTTGGTGATCGCTACTTTGGCACGGATGATTAA 1395 0.4358 MEAASGPHFSGLRLDGLLPSSSPTSSLPTPDSTLAPDSLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLRPEELERVHEYNFDHPDAFDTEQLLECMKKLISGQRVQVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQGVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHLRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTDD* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02302 464 CDD PRTases_typeI 320 435 IPR000836 -
Rops8g02302 464 ProSiteProfiles UvrC family, homology region profile. 149 232 IPR001162 GO:0009381
Rops8g02302 464 Pfam Uracil phosphoribosyltransferase 261 462 - -
Rops8g02302 464 CDD UMPK 45 243 IPR000764 -
Rops8g02302 464 Pfam Phosphoribulokinase / Uridine kinase family 45 231 IPR006083 GO:0005524|GO:0016301
Rops8g02302 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 236 IPR027417 -
Rops8g02302 464 Gene3D - 40 246 IPR027417 -
Rops8g02302 464 MobiDBLite consensus disorder prediction 17 40 - -
Rops8g02302 464 SUPERFAMILY PRTase-like 246 463 IPR029057 -
Rops8g02302 464 FunFam Uridine kinase 247 462 - -
Rops8g02302 464 NCBIfam uridine kinase 43 243 IPR000764 -
Rops8g02302 464 PANTHER URIDINE KINASE 41 373 - -
Rops8g02302 464 FunFam Uridine kinase 40 246 - -
Rops8g02302 464 Gene3D - 247 462 IPR029057 -
Rops8g02302 464 PRINTS Uridine kinase signature 175 185 - -
Rops8g02302 464 PRINTS Uridine kinase signature 118 133 - -
Rops8g02302 464 PRINTS Uridine kinase signature 189 200 - -
Rops8g02302 464 PRINTS Uridine kinase signature 43 60 - -
Rops8g02302 464 PRINTS Uridine kinase signature 211 224 - -
Rops8g02302 464 PRINTS Uridine kinase signature 73 84 - -
Rops8g02302 464 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02302 Rops-Chr8 52996265 53002622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02302 1 464 PRT Gene Family AT5G40870 87.104 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02302 K00876 - gmx:100780005 872.463