Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02297 ATGAGAGCTTTGGTCTTTTTCCTTTGGCTGTTTGTCCCCTCATTGGGTAAAGACCTGCTAAGCTGTGAGACAACATCACCAGATGCCTCTGGCTACCATTGCATTGAAAATGGGACACAAAGCCATTGTGCAACATTTGCACTCTTTCTCACTAATTCTTACTACTCATCTCTTTCCAACCTGACCTTGTACTTAGGACTCAACAGGTTTGTCATAGCTAAAGCAAATGGGTTCTCTGCAGAAACTGAGTTCCTCTCACAGGACCAGCCTCTTCTGATACCAATTGAATGCAAATACAAAGGTGGAGTTTTTCATGCTGAGTTAACCAAAACTACCATCAAAGGGGAGAGCTTTTATGCTATTGCTCAATCACTGAAGGGCTTGACAACCTGCAAGGCTATCAGGGACAATAACCCGGGTGTGTCACCTTGGAATCTTGATGGTAAAGTCAAATTGCTTATCCCATTGAGATGTGCCTGTCCATTTGCATCTCAAGTTAGACCAGAACCAAAACTTCTGCTTTCTTATCCTGTAAGTGAAGGTGATACAATTTCCAATTTGGCCTCAAAGTTCAATACTACAAAAGAAACTATTGTTTCTGCAAATAACATATCATTAAAAGGCCTAGCACCCTTTACCTCTATTCTGATTCCACTGAATGGTGACCCTATCCTAGGTTCTCTGGCTAAACCCAAGAAACCCAGTTCTGGTTTTCCAAAAACCAGTATCCCAGTAATTGGTCCACATAAGAAGTCAAAAATGAGGAAGACTGAATTGTATATTGGGCTAGCTGGGGTTGTACTTGGAGTCTGCATTGTTTTTGTGGCTGGCTTTTTTGTGATCAGATTGAAGCATAAGAAGGAGGAAGAGAATTCAGGCAAAGAAGGAGATATGGAGCTGCAACACCTGAATCAAAGTGTAAGAACCATCAGTGACAAGAAAGTTTCATTTGAGGGATCTCAGGATACTTTTGATGGGAAAATTATTGATGCCACACCACGTAAGATGTTGCTAGAGGCATATACTATTGAAGATATGAGAAAAGCAACTGAGGATTTCAGTTCAAGCAGTCTTATTGAGGGATCAGTATTTCATGGTCGTCTAAATGGGAAGAACATGGCAATCAAAAGAACAAAGACAGAGACTGTGTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACCAGCATCCCAACATTCTTAGGCTTCTTGGAACAAGCTTGTTGGAGGGACCAGAGTCATTTTTGGTTTTTGAGTATGCTGAAAATGGTTCATTGAAAGATTGGCTTCATAGTGGCTTGGCCATCAAGAACCAGTTCATTGCTTCCTGTTATTGTTTCCTGAATTGGAACCAAAGGCTCAGGATCTGCCTTGATGTGGCAAGTGCTTTGCAGTATATGCACCATGTTATGAATCCAAGCTACGTGCATAGAAATGTGAAGAGCAGGAACATATTTTTAGATGAAGAATTTAGTGCCAAGATAGGCAATTTTGGGATGGCAAGTTGTGTTGAGAATGACACTGAGGACCCAAATTTCTATTCCACCAACCCTGCCTCTTGGAGTCTGGGTTATTTTGCACCTGAATATGTGCACCAAGGTATAATTTCCCCAAGCATTGATATCTTTGCTTATGGGGTGGTTTTGTTGGAAGTTTTGTCAGGTCAAACACCTATAAGCATGTCAAGTGATAAGGGAGAAGGAAGCATTTGCCTTACAGATAAAATCAAGTCCATTTTATTGTCAGAAAATGTGAATGAACTAAGGGAGTGGATAGACAGTGCCTTAGGGGAGAACTACTCATTTGATGCAGCTGTCACAGTGGCCAACATTGCAAGAGCTTGTGTGGAGGAAGATTTTACTTTGAGACCCAGTGCAAGGGAAATTGTTGAGAAGCTATCAAGATTGGTGGAGGAATTACCAGCAAGGGAACAACATATGTTAATGAGTGAAAGCTCTAGCAAACCTCTTGTGGAAACAGTAGGAACCACTCTGTGA 2001 0.4138 MRALVFFLWLFVPSLGKDLLSCETTSPDASGYHCIENGTQSHCATFALFLTNSYYSSLSNLTLYLGLNRFVIAKANGFSAETEFLSQDQPLLIPIECKYKGGVFHAELTKTTIKGESFYAIAQSLKGLTTCKAIRDNNPGVSPWNLDGKVKLLIPLRCACPFASQVRPEPKLLLSYPVSEGDTISNLASKFNTTKETIVSANNISLKGLAPFTSILIPLNGDPILGSLAKPKKPSSGFPKTSIPVIGPHKKSKMRKTELYIGLAGVVLGVCIVFVAGFFVIRLKHKKEEENSGKEGDMELQHLNQSVRTISDKKVSFEGSQDTFDGKIIDATPRKMLLEAYTIEDMRKATEDFSSSSLIEGSVFHGRLNGKNMAIKRTKTETVSKIDLGLFHDALHQHPNILRLLGTSLLEGPESFLVFEYAENGSLKDWLHSGLAIKNQFIASCYCFLNWNQRLRICLDVASALQYMHHVMNPSYVHRNVKSRNIFLDEEFSAKIGNFGMASCVENDTEDPNFYSTNPASWSLGYFAPEYVHQGIISPSIDIFAYGVVLLEVLSGQTPISMSSDKGEGSICLTDKIKSILLSENVNELREWIDSALGENYSFDAAVTVANIARACVEEDFTLRPSAREIVEKLSRLVEELPAREQHMLMSESSSKPLVETVGTTL* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02297 666 CDD LysM 175 205 IPR018392 -
Rops8g02297 666 FunFam PTI1-like tyrosine-protein kinase 3 422 648 - -
Rops8g02297 666 Pfam Protein kinase domain 361 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02297 666 Gene3D LysM domain 174 218 IPR036779 -
Rops8g02297 666 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 16 641 - -
Rops8g02297 666 Gene3D Transferase(Phosphotransferase) domain 1 422 656 - -
Rops8g02297 666 ProSiteProfiles Protein kinase domain profile. 349 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02297 666 Gene3D Phosphorylase Kinase; domain 1 329 421 - -
Rops8g02297 666 SUPERFAMILY Protein kinase-like (PK-like) 336 634 IPR011009 -
Rops8g02297 666 SMART LysM_2 175 218 IPR018392 -
Rops8g02297 666 Pfam LysM domain 176 218 IPR018392 -
Rops8g02297 666 ProSiteProfiles LysM domain profile. 174 217 IPR018392 -
Rops8g02297 666 SUPERFAMILY LysM domain 175 218 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02297 Rops-Chr8 52900198 52902198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02297 31 660 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.729 2.92e-151 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Rops8g02297 Pkinase 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02297 - - gmx:100816082 1099.35