LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g02278	ATGGAAGAAAAGAGCAGAAACTGCACCACCAACCAGGTGGATCCAAAAAGCGGTTTCAACTCCGTTTCCAGAACCTTCCACAGTCTCAGACCCCCGCTGAACCTTCCTCCGCCTGACGCCACCATCTCCGCCGCAGCCTACACCCTCTCCCTCCGCCGCAACTCGCCCTGGTCAGACTCGGTGATTGCCCTCGTCGACTCAGCCACGTGTCACCAACTCTCCTACTCCGATTTCATCAACCGTTCACAAACCTTAGCCAAAAACCTCACCACTCTCTATGGACTCACCAAAGGCCACACCGCGTTCGTTCTCTCCCCAAACCTCATTCAGATTCCGATCCTCTACTTCGCGCTACTCTCAATTGGCGTGATAGTCTCACCGGCAAACCCAGTTTCCACTCGCTACGAGATTTCGCATCTCCTCAACCTCTGCCAACCTGTCATCGCCTTTGCGACGTCGTTTTCGGCGAACAAGCTCCCAGGCTTCCCTCTCGGAACGATTCTCCTTGACTCGCCCGAGTTTGACTCACTCTTGAAGGAAGCCAGTTCGACTACGCCGTCGAACGTGGAGGTGAGTCAATCCGACGCGGCGGCGATTCTGTTCTCGTCCGGGACCACCGGGAAGTCAAAAGGCGTGATGCTCACTCACCGGAACTTGACAGCGATGGTAACGCATAACGACGCCGTTCGCCTACGGACGGAGAGCCCCGCGGTGTACCTGCATACGGTGCCGTATTTTCACGTGTACGGTTTTACGCAAAGCTTACGATCTGTTGTTATGATGGACACGGTGGTTGTGATGGAGAGGTTCGATTTAAGGAAGATGCTAGGTGCGGTGGAGAGGTTCCGATTGACTCACCTTGCGGTGGCGCCGCCGGTAATGGTGGCGATGAGCAAGGAAAGAGTGACGGAGGGTTATGATTTGAGATCGTTGAAAGGTGTCCGTTGTGGCGGTGCTCCGCTGGGAAAGGAAACCGTGGCGGCTTTCAAATCCAAGTTTCCCGGAGTATTACTCAAACAGGGATATGGGTTAACTGAATCAACGGCTGCAGCTATCCGAACAATGGGTCCCGAGGAGGCTAGCCGGCCAGGATCAACAGGTAGACTGGTTGCAGGAATGGAAGCAAAAATAGTGAACCCAAACACAGGAGAGGCCATGGCTCCCGGTGAACAAGGGGAACTCTGGCTTAGAGGACCTCTAGTTATGAAAGGTTATGTTGATGACCCGGAGGCAACTTCTGTTACTTTGGTGGACGGGTGGTTGAGGACTGGGGATCTTTGTTATTTCGATGATGAGGGTTTCATGTATGTGGTAGACAGGTTGAAAGAATTGATCAAATACAAGGGCTATCAGGTGGCCCCTGCAGAGCTAGAACAATTGCTCCAGTGTCACCCAGAGATCGATGATGCTGCAGTTATTCCATACCCTGATGAAGATGCCGGCCAAGTACCCATGGCTTTTGTGGTAAGACAACCTCAAAGTTCACTGGACGAAGCAGAAATAATAGATTTTGTAGCCAAACAGGTTGCACCATACAAGAAAATAAGGCGTGTAGCATTTGTCGATTCCATACCAAAGAATGCAGCTGGAAAAATACTGAGGAAGGACTTAAATAAAATTGTCCTCCAACGATCTTGTTCTAGGTTATAA	1650	0.5158	MEEKSRNCTTNQVDPKSGFNSVSRTFHSLRPPLNLPPPDATISAAAYTLSLRRNSPWSDSVIALVDSATCHQLSYSDFINRSQTLAKNLTTLYGLTKGHTAFVLSPNLIQIPILYFALLSIGVIVSPANPVSTRYEISHLLNLCQPVIAFATSFSANKLPGFPLGTILLDSPEFDSLLKEASSTTPSNVEVSQSDAAAILFSSGTTGKSKGVMLTHRNLTAMVTHNDAVRLRTESPAVYLHTVPYFHVYGFTQSLRSVVMMDTVVVMERFDLRKMLGAVERFRLTHLAVAPPVMVAMSKERVTEGYDLRSLKGVRCGGAPLGKETVAAFKSKFPGVLLKQGYGLTESTAAAIRTMGPEEASRPGSTGRLVAGMEAKIVNPNTGEAMAPGEQGELWLRGPLVMKGYVDDPEATSVTLVDGWLRTGDLCYFDDEGFMYVVDRLKELIKYKGYQVAPAELEQLLQCHPEIDDAAVIPYPDEDAGQVPMAFVVRQPQSSLDEAEIIDFVAKQVAPYKKIRRVAFVDSIPKNAAGKILRKDLNKIVLQRSCSRL*	550

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g02278	549	MobiDBLite	consensus disorder prediction	1	21	-	-
	Rops8g02278	549	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	21	539	-	-
	Rops8g02278	549	SUPERFAMILY	Acetyl-CoA synthetase-like	60	543	-	-
	Rops8g02278	549	Gene3D	-	443	546	IPR045851	-
	Rops8g02278	549	CDD	4CL	60	537	-	-
	Rops8g02278	549	Pfam	AMP-binding enzyme C-terminal domain	456	531	IPR025110	-
	Rops8g02278	549	Gene3D	-	37	442	IPR042099	-
	Rops8g02278	549	Pfam	AMP-binding enzyme	62	447	IPR000873	-
	Rops8g02278	549	FunFam	4-coumarate--CoA ligase 2	443	544	-	-
	Rops8g02278	549	ProSitePatterns	Putative AMP-binding domain signature.	199	210	IPR020845	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g02278	Rops-Chr8	52384654	52392875	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g02278	13	549	Monolignol Biosynthesis Gene Families	AT5G63380	52.355	0.0	584

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g02278	K01904		-	gmx:100801143	729.554

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