Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02278 ATGGAAGAAAAGAGCAGAAACTGCACCACCAACCAGGTGGATCCAAAAAGCGGTTTCAACTCCGTTTCCAGAACCTTCCACAGTCTCAGACCCCCGCTGAACCTTCCTCCGCCTGACGCCACCATCTCCGCCGCAGCCTACACCCTCTCCCTCCGCCGCAACTCGCCCTGGTCAGACTCGGTGATTGCCCTCGTCGACTCAGCCACGTGTCACCAACTCTCCTACTCCGATTTCATCAACCGTTCACAAACCTTAGCCAAAAACCTCACCACTCTCTATGGACTCACCAAAGGCCACACCGCGTTCGTTCTCTCCCCAAACCTCATTCAGATTCCGATCCTCTACTTCGCGCTACTCTCAATTGGCGTGATAGTCTCACCGGCAAACCCAGTTTCCACTCGCTACGAGATTTCGCATCTCCTCAACCTCTGCCAACCTGTCATCGCCTTTGCGACGTCGTTTTCGGCGAACAAGCTCCCAGGCTTCCCTCTCGGAACGATTCTCCTTGACTCGCCCGAGTTTGACTCACTCTTGAAGGAAGCCAGTTCGACTACGCCGTCGAACGTGGAGGTGAGTCAATCCGACGCGGCGGCGATTCTGTTCTCGTCCGGGACCACCGGGAAGTCAAAAGGCGTGATGCTCACTCACCGGAACTTGACAGCGATGGTAACGCATAACGACGCCGTTCGCCTACGGACGGAGAGCCCCGCGGTGTACCTGCATACGGTGCCGTATTTTCACGTGTACGGTTTTACGCAAAGCTTACGATCTGTTGTTATGATGGACACGGTGGTTGTGATGGAGAGGTTCGATTTAAGGAAGATGCTAGGTGCGGTGGAGAGGTTCCGATTGACTCACCTTGCGGTGGCGCCGCCGGTAATGGTGGCGATGAGCAAGGAAAGAGTGACGGAGGGTTATGATTTGAGATCGTTGAAAGGTGTCCGTTGTGGCGGTGCTCCGCTGGGAAAGGAAACCGTGGCGGCTTTCAAATCCAAGTTTCCCGGAGTATTACTCAAACAGGGATATGGGTTAACTGAATCAACGGCTGCAGCTATCCGAACAATGGGTCCCGAGGAGGCTAGCCGGCCAGGATCAACAGGTAGACTGGTTGCAGGAATGGAAGCAAAAATAGTGAACCCAAACACAGGAGAGGCCATGGCTCCCGGTGAACAAGGGGAACTCTGGCTTAGAGGACCTCTAGTTATGAAAGGTTATGTTGATGACCCGGAGGCAACTTCTGTTACTTTGGTGGACGGGTGGTTGAGGACTGGGGATCTTTGTTATTTCGATGATGAGGGTTTCATGTATGTGGTAGACAGGTTGAAAGAATTGATCAAATACAAGGGCTATCAGGTGGCCCCTGCAGAGCTAGAACAATTGCTCCAGTGTCACCCAGAGATCGATGATGCTGCAGTTATTCCATACCCTGATGAAGATGCCGGCCAAGTACCCATGGCTTTTGTGGTAAGACAACCTCAAAGTTCACTGGACGAAGCAGAAATAATAGATTTTGTAGCCAAACAGGTTGCACCATACAAGAAAATAAGGCGTGTAGCATTTGTCGATTCCATACCAAAGAATGCAGCTGGAAAAATACTGAGGAAGGACTTAAATAAAATTGTCCTCCAACGATCTTGTTCTAGGTTATAA 1650 0.5158 MEEKSRNCTTNQVDPKSGFNSVSRTFHSLRPPLNLPPPDATISAAAYTLSLRRNSPWSDSVIALVDSATCHQLSYSDFINRSQTLAKNLTTLYGLTKGHTAFVLSPNLIQIPILYFALLSIGVIVSPANPVSTRYEISHLLNLCQPVIAFATSFSANKLPGFPLGTILLDSPEFDSLLKEASSTTPSNVEVSQSDAAAILFSSGTTGKSKGVMLTHRNLTAMVTHNDAVRLRTESPAVYLHTVPYFHVYGFTQSLRSVVMMDTVVVMERFDLRKMLGAVERFRLTHLAVAPPVMVAMSKERVTEGYDLRSLKGVRCGGAPLGKETVAAFKSKFPGVLLKQGYGLTESTAAAIRTMGPEEASRPGSTGRLVAGMEAKIVNPNTGEAMAPGEQGELWLRGPLVMKGYVDDPEATSVTLVDGWLRTGDLCYFDDEGFMYVVDRLKELIKYKGYQVAPAELEQLLQCHPEIDDAAVIPYPDEDAGQVPMAFVVRQPQSSLDEAEIIDFVAKQVAPYKKIRRVAFVDSIPKNAAGKILRKDLNKIVLQRSCSRL* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02278 549 MobiDBLite consensus disorder prediction 1 21 - -
Rops8g02278 549 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 539 - -
Rops8g02278 549 SUPERFAMILY Acetyl-CoA synthetase-like 60 543 - -
Rops8g02278 549 Gene3D - 443 546 IPR045851 -
Rops8g02278 549 CDD 4CL 60 537 - -
Rops8g02278 549 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Rops8g02278 549 Gene3D - 37 442 IPR042099 -
Rops8g02278 549 Pfam AMP-binding enzyme 62 447 IPR000873 -
Rops8g02278 549 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Rops8g02278 549 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02278 Rops-Chr8 52384654 52392875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02278 13 549 Monolignol Biosynthesis Gene Families AT5G63380 52.355 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02278 K01904 - gmx:100801143 729.554