Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02277 ATGGAAGACAAGACCAGAAGCGGAACCACCAACCCGGTAGATCCGAAGAGCGGTTTCAACTCCGTTTCCAGAACCTTCCACAGCCTCAGGCCCCCACTGAACCTTCCTCCGCCTGACGCCACTGTCTCCGTAGCAGCCTATACCCTATCCCTCCGCCGCCACTCACCCTGGTCAGACTCAGTGATTGCTCTCATTGACTCGGCCACGTGTCACCAACTCTCCTACTCTGATTTCATCAACCGTTCACATACCTTAGCCAAAAACCTCACCACTCTCTATGGACTCACCAAAGGCCACACCGCATTCGTTCTCTCCCCAAACCTCATCCAGATTCCAATCCTCTACTTCGCACTACTCTCTATCGGTGTGGTCGTCTCCCCCGCAAACCCAACCTACACGCGCTCTGAGATTTCGCATCTCCTCAACCTCTGCCAACCTGTCATCGCTTTTGCGACGTCGTTTTCAGCGCACAATCTCCCACGCCTCCCTCTCGGAACGATTCTCTTCGATTCGCCCGAGTTCGACTCGCTCACGACGGCTACGAGTTCGACCGCGCCGCCGGACTTGAAGGTGAGTCAATCCGACTTGGCGGCGGTTCTGTACTCTTCTGGAACCACCGGGAAGTCAAAAGGCGTGATGCTCACTCACCGGAACTTGACAGCTTCGGTGGCGGCACACGACGCCATTCGCGTGCGGACGGAGAGTCCCGCGGTTTACCTACATACGGTTCCGTATTTTCACGTGTACGGTTTTGCGCAATGCTTGAAGTCGGTGGCTATGATGGAGACGGTGGTGGTAATGGAGAGGTTTGGTTTGGGGAAGATGCTGGGTGCGGTGGAGAGGTTCCGACTGACTCATGTTGCGGTGGCACCGCCGGTTGTGGTGGCGATGAGTAAAGAGGGAGTGACGGAAGGGTACAATTTGAGTTCGTTGAAAGGAATCGCTTTTGGTGGTGCTCCGCTGGGAAAGGACAACGTGGCGGCTTTCAAATCCAAGTTCCCTAGAGTACTTCTCGTCCAGGGATATGGATTAACTGAATCAACGGCCGGAGTTATCCGAACAATAGGTCCCGAAGAGGCTAGTCGACTAGGAACAACAGGTAGGCTTGTATCAGGGATGGAAGCAAAAATAGTGAACCCCAATACAGGAGAGGCCATGGCTCTTGGTGAACAAGGGGAACTCTGGCTTAGAGGACCTTCAATTATGAAAGGTTATGTTGGTGACCAGGAGGCAACTTCTGTTACTTTGGGGGACGGGTGGCTGAGGACTGGGGACCTTTGCTATTTCGACAATGAGGGTTTTATGTATGTGGTAGACAGGTTGAAAGAATTAATCAAATACAAGGGCTACCAGGTGGCCCCTGCGGAGCTAGAACAATTGCTCCAGTCTCACCCAGAGATAAAGGATGCGGCAGTTATTCCATACCCTGATGAAGATGCCGGCCAGGTGCCCATGGCCTTTGTTGTAAGACAGCCTCAAAGTTCCCTAAATGAAGTAGAAATAATAGATTTTGTAGCCAAACAGGTTGCACCATACAAGAAAATAAAGCGTTTAGCATTCGTCGATTCCATTCCAAAGAATGCAGCTGGAAAAGTTCTGAGGAAGGACCTAAATAAAATCGTCCTCCAACGATTTTGCTCTAAGTTATAA 1650 0.5164 MEDKTRSGTTNPVDPKSGFNSVSRTFHSLRPPLNLPPPDATVSVAAYTLSLRRHSPWSDSVIALIDSATCHQLSYSDFINRSHTLAKNLTTLYGLTKGHTAFVLSPNLIQIPILYFALLSIGVVVSPANPTYTRSEISHLLNLCQPVIAFATSFSAHNLPRLPLGTILFDSPEFDSLTTATSSTAPPDLKVSQSDLAAVLYSSGTTGKSKGVMLTHRNLTASVAAHDAIRVRTESPAVYLHTVPYFHVYGFAQCLKSVAMMETVVVMERFGLGKMLGAVERFRLTHVAVAPPVVVAMSKEGVTEGYNLSSLKGIAFGGAPLGKDNVAAFKSKFPRVLLVQGYGLTESTAGVIRTIGPEEASRLGTTGRLVSGMEAKIVNPNTGEAMALGEQGELWLRGPSIMKGYVGDQEATSVTLGDGWLRTGDLCYFDNEGFMYVVDRLKELIKYKGYQVAPAELEQLLQSHPEIKDAAVIPYPDEDAGQVPMAFVVRQPQSSLNEVEIIDFVAKQVAPYKKIKRLAFVDSIPKNAAGKVLRKDLNKIVLQRFCSKL* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02277 549 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 539 - -
Rops8g02277 549 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Rops8g02277 549 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Rops8g02277 549 Gene3D - 443 545 IPR045851 -
Rops8g02277 549 Gene3D - 35 442 IPR042099 -
Rops8g02277 549 CDD 4CL 60 537 - -
Rops8g02277 549 Pfam AMP-binding enzyme 62 447 IPR000873 -
Rops8g02277 549 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Rops8g02277 549 SUPERFAMILY Acetyl-CoA synthetase-like 53 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02277 Rops-Chr8 52362166 52367280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02277 5 549 Monolignol Biosynthesis Gene Families AT5G63380 50.799 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02277 K01904 - gmx:100801143 691.419