Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02276 ATGGGAAGGAGTTCTCCTATTTCACTCATTATCTGCTTCTTTTTCCTGCACTTGTTAGCATGGTCAAGGGTGTTACTAGCTAATGAAAGAAGAGGCCATTGCTTAGATCCCCCAAGGTCCATTATGAGCATAGGAGCTGTGCTTGATTTGGGTTCACTAATTGGCAAGCAGCAGAAGATAGCAATGGACATTGCAGTTCAAGAGTTCAATCGCTTGAGTTGTTCCAAGCTGGATTTGAAGATCAAAAATTCCCACGGGAATTCGGCTCAAGCAATAACTAGTGCCATGGATCTCACAAAGAGCAACCAAGTGCTAGCTATCACAGGAACAATAACACACAACGAAGCAACTCTTGCTAGTGAATTCAATGACACCATAAAGAACGTTCCTATCTTGTCTCTAACTTCACCTGCAGCCAGAGTAGAGTTATTATCTCCTCGATTGCCACACTTCATCCAAGTGGGAGATGATATCAGCCTACACATGCAATGCATTGCAGCCATTGTAGGAGAATTCAGATGGCAAAAAACTGTTGGTTCTGAGATTGAAAACCATTTAGCTTTGCCTTCCTTATCCACTTTGCCAGACCCAAAATCTACAATTGAAAATGAACTTAGTAAGCTGAAGAAGAAGAGTAACAGGGTCTTCTTGATTGTGCAATCTTCATTAGAGCTTGCTAACATGCTTTGTGAGCAAGCAAAGCAAATGGGTTTGATGGAAAAAGATTCCGTGTGGGTTATCCCAGATGGGGTTGCTGGCCTTCTTGATGCTGTTAACTCTTCTGTTATCTTTAACATGCAAGGTGTGGTGGGATTTACAACATACTTCATGGAAATGAGTGACCCATTTAGAAAGTTCAAATTCAAATTTAGAAGAAGGTTTGCATTAGAATACCCTGAAGAAGAGAACATTAACCCAAGCATCTTTGCACTTAGAGCATATGATGCAACTTGGGCTATTGCTCAGGCTGCAAATCAATCACAAGGAAATTTCAGCCTTGAAGAATTTTCTGGAAAGATTCTATCCAGTAAATTTGACAAACTAAGTGGAAAGATTAGCTCCACCTTCACTATAATCAATGTGATAGGGAAAAGTTATAGAGAAATGGCATTTTGGTCTCCATCACTTGGTTTTACCAAGAAAATGGTTAATGGTTCTACTGAAGTTTTCAGAACAGTTTATTGGCCTGAAGGCTTACAATCAGTTCCTAAAGGATGGACACACAGTAATGAGAAAAGGTCATTGAAAATAGGAGTGCCTGCCAATGGTGCTTTTACTCAATTTGTGAATGTGACATATGATAAGAGCACGAATGAAACTTCCATCACTGGTTTCTCAATCAGTGTCTTTAAAGCAGCTGTTAAACGTTTGCCTTATGACTTGCAATACGTGTTTGTTCCCTTCAATGGCTCTTATGATGAAATGGTTGATCAAGTCCACAGTAAGACATTAGATGCTGCCGTTGGGGACGCATCAATAATGGCATATAGGTATCATTTAGTGGACTTCTCACAACCATATGTTGAGTCTGGCCTCAATATGGTGGTTACTGAGCAACCAGCCAAATCAAAAGAAGCATGGATGTTTTTGGATGCCTTTACCAAAGAGATGTGGTTGATGATGGCAGCTATACACATTTTGGTGGGGTTTGTCATTTGGTTGATAGAAAGGGAAGCTAATGCAGAACTAAAGGGATTGGGGTCCATGCTTTGGTTTCTAGTCACTGTAATATTCTATGCACACAGAGAACCAATAAGAAGACCCTTGGCTAGAACTGTGTTGGCACCATGGTTATTTGTTATCCTCATTGTAACAAGTAGTTTCACAGCAAGTTTGACAAGCATGTTGACAGTTTCGCAAGTAGAGCCATCTGTGTTGGATATCCAGACCCTTCTAAAAAGAAATTCCCCTGTTGGCTGTGATGGAAATTCATTTATAGTGAAGTATTTGACTGAAGTGTTATCATTCAAACCTGAGAACATTAGGAAGATAAATTCCATAAGTGACTACCCTGCTGCCTTTAAGAACAAGGATATCGAAGCCGCTTTCTTTGTTGCACCTCATGCTAAAGTCTTTCTTGCAAAGTACTCATGTCAGGGCTTCATCAAGGCAGGGAAAACTTTTAGGCTTGGTGGCTTTGGTTTTGTGGGTTTCTCTCCTCTCATTGTCACTGTTTTATGA 2181 0.4035 MGRSSPISLIICFFFLHLLAWSRVLLANERRGHCLDPPRSIMSIGAVLDLGSLIGKQQKIAMDIAVQEFNRLSCSKLDLKIKNSHGNSAQAITSAMDLTKSNQVLAITGTITHNEATLASEFNDTIKNVPILSLTSPAARVELLSPRLPHFIQVGDDISLHMQCIAAIVGEFRWQKTVGSEIENHLALPSLSTLPDPKSTIENELSKLKKKSNRVFLIVQSSLELANMLCEQAKQMGLMEKDSVWVIPDGVAGLLDAVNSSVIFNMQGVVGFTTYFMEMSDPFRKFKFKFRRRFALEYPEEENINPSIFALRAYDATWAIAQAANQSQGNFSLEEFSGKILSSKFDKLSGKISSTFTIINVIGKSYREMAFWSPSLGFTKKMVNGSTEVFRTVYWPEGLQSVPKGWTHSNEKRSLKIGVPANGAFTQFVNVTYDKSTNETSITGFSISVFKAAVKRLPYDLQYVFVPFNGSYDEMVDQVHSKTLDAAVGDASIMAYRYHLVDFSQPYVESGLNMVVTEQPAKSKEAWMFLDAFTKEMWLMMAAIHILVGFVIWLIEREANAELKGLGSMLWFLVTVIFYAHREPIRRPLARTVLAPWLFVILIVTSSFTASLTSMLTVSQVEPSVLDIQTLLKRNSPVGCDGNSFIVKYLTEVLSFKPENIRKINSISDYPAAFKNKDIEAAFFVAPHAKVFLAKYSCQGFIKAGKTFRLGGFGFVGFSPLIVTVL* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02276 726 Gene3D - 311 413 - -
Rops8g02276 726 SMART GluR_14 414 720 IPR001320 GO:0015276|GO:0016020
Rops8g02276 726 FunFam Glutamate receptor 526 659 - -
Rops8g02276 726 CDD GluR_Plant 415 725 - -
Rops8g02276 726 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 721 IPR015683 -
Rops8g02276 726 Gene3D - 414 525 - -
Rops8g02276 726 Pfam Receptor family ligand binding region 59 177 IPR001828 -
Rops8g02276 726 Pfam Receptor family ligand binding region 200 328 IPR001828 -
Rops8g02276 726 Gene3D - 526 657 - -
Rops8g02276 726 SUPERFAMILY Periplasmic binding protein-like II 391 716 - -
Rops8g02276 726 Gene3D - 175 304 - -
Rops8g02276 726 FunFam Glutamate receptor 410 525 - -
Rops8g02276 726 Pfam Ligand-gated ion channel 535 643 IPR001320 GO:0015276|GO:0016020
Rops8g02276 726 Pfam Bacterial extracellular solute-binding proteins, family 3 439 704 IPR001638 -
Rops8g02276 726 Gene3D - 38 166 - -
Rops8g02276 726 SUPERFAMILY Periplasmic binding protein-like I 43 406 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02276 Rops-Chr8 52353103 52358261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02276 95 715 Ion Channels AT5G11210 31.942 1.44e-101 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02276 - - gmx:100778941 1044.26