Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02274 ATGGGAAGGAGTTCTCCTATGTCACACATTATCTGCTTCTTTTTCCTGCACTTGTTAGCATGGTCAAGGGTGTTACTAGCTAATGAAAGAAGAGGCCATTGCTTAGTTCCCCCAAGGTCCATTATGAGCATAGGAGCTGTGCTTGATTTGGGTTCACTAATTGGCAAGCAGCAGAAGATAGCAATGGACATTGCAGTTCAAGAGTTCAATCGCTTGAGTTGTTCCAAGCTGGATTTGAAGATAAAAAATTCCCACGGGAATTCGGCTCAAGCAATAACTAGTGCCATTGTAGGAGAATTCAGATGGAAAAAAGTGACAGCAATTTATGAACTTAATAATGGGTTTTCCTCTGATCCAGGGATGCTGCTGAGCCTCTCCTATTCTCTTAGACTTGTTGGTTCTGAGATTGAAAACCATTTAGCTTTCCCTTCCTTATCCACTCTGCCAGACCCAAAATCTACAATTGAAAATGAGCTTAGTAAGTTGAAGAAGAAGAGTAACAGGGTCTTCTTGATTGTGCAATCTTCATTAGAGCTTGCTAACATGCTTTGTGAGCAAGCAAAGCAAATGGGTTTGATGGAAAAAGATTCTGTGTGGGTTATCCCAGATGGGGTTGCTGGCCTTCTTGATGCTGTTAACTCTTCTGTTATCTTTAACATGCAAGGTGTTGTGGGATTTACAACACACTTCATGGAAATGAGTGACCCATTTAGAAAGTTCAAATTCAAATTTAGAAGAAGGTTTGCATTAGAATACCCTGAAGAAGAGAACATTAACCCAAGCATCTTTGCACTTAGAGCATATGATGCAACTTGGGCTATTGCTCAGGCTGCAAATCAATCACAAGGAAATTTCAGCCTTGAAGAATTTTCTGGAAAGATTCTGTCCAGTAAATTTGACAAACTAAGTGGAAAGATTAGCTCCACCTTCAATATAATCAATGTGATAGGGAAAAGTTATAGAGAAATGGCATTTTGGTCTCCATCACTTGGTTTTACCAAGAAAATGGTTAATGGTTCTACTGAAGTTTTCAGAACAGTTTATTGGCCTGAAGGCTTACAATCAGTTCCAAAAGGATGGACACACAGCAATGAGGAAAGGTCATTGAAAATAGGAGTGCCTGCCAATGGTGCTTTTACTCAGTTTGTGAATGTGACATATGATAAGAGCACGAATGAAACTTCCATCAATGGTTTCTCAGTCAGTGTCTTTCAAGCAGCTGTTAAACGTTTGCCTTATCACTTGCCATACGAGTTTGTTCCCTTTAATGGCTCTTATGATGAAATGGTTGATCAAGTCCACAGTAAGACATTGGATGCTGCTGTTGGAGACACATCAATAATGGCATATAGATATCATTTAGTGGACTTCTCACAACCATATGTTGAGTCTGGGCTCCATATGGTGGTTACTGAGCAACCAGCCAAATCAAAAGAAGCGTGGATGTTTTTGGATGCCTTTACCAAAGAGATGTGGTTGATGATGGCAGCTATACACATTTTGGTAGGGTTTGTCATTTGGTTGATAGAAAGGGAAGCTAATGCAGAATTAAAGGGATTGGGGTCCATGCTTTGGTTTCTAGTCACTGTAATATTCTTTGCACACACAGGAGAACCAATAAGAAGACCCTTGGCTAGAATTGTGTTGGCACCATGGTTATTTGTTATAATAATTGTAACAAGTGGTTTCACAGCAAGTTTGACAAGCATGATGACAGCTTCGCAACTAGAGCCATCTGTGTTGGATATCCAGACCCTTCTGAAAAGAAATTCCCCTGTTGGTTGTGATGGAAATTCATTTATAGTGAAGTATTTGACTGAAGTATTATCATTCAAGCCTGAGAACATTAGGAAGATAAATTCCACAAGTGACTACCCTGCTGCCTTTAAGAACAAGGATATCGAAGCCGCTTTCTTTGTTGCACCTCACGCTAAAGTCTTTCTTGCAAAGTACTCATGCCAGGGATTCGTCAAGGCAGGGGACACTTTTAGGCTTGGTGGCTTTGGTTTTGTGGCTTTCTCTCCTCTCATTGTCACTGTTTTATGA 2046 0.4027 MGRSSPMSHIICFFFLHLLAWSRVLLANERRGHCLVPPRSIMSIGAVLDLGSLIGKQQKIAMDIAVQEFNRLSCSKLDLKIKNSHGNSAQAITSAIVGEFRWKKVTAIYELNNGFSSDPGMLLSLSYSLRLVGSEIENHLAFPSLSTLPDPKSTIENELSKLKKKSNRVFLIVQSSLELANMLCEQAKQMGLMEKDSVWVIPDGVAGLLDAVNSSVIFNMQGVVGFTTHFMEMSDPFRKFKFKFRRRFALEYPEEENINPSIFALRAYDATWAIAQAANQSQGNFSLEEFSGKILSSKFDKLSGKISSTFNIINVIGKSYREMAFWSPSLGFTKKMVNGSTEVFRTVYWPEGLQSVPKGWTHSNEERSLKIGVPANGAFTQFVNVTYDKSTNETSINGFSVSVFQAAVKRLPYHLPYEFVPFNGSYDEMVDQVHSKTLDAAVGDTSIMAYRYHLVDFSQPYVESGLHMVVTEQPAKSKEAWMFLDAFTKEMWLMMAAIHILVGFVIWLIEREANAELKGLGSMLWFLVTVIFFAHTGEPIRRPLARIVLAPWLFVIIIVTSGFTASLTSMMTASQLEPSVLDIQTLLKRNSPVGCDGNSFIVKYLTEVLSFKPENIRKINSTSDYPAAFKNKDIEAAFFVAPHAKVFLAKYSCQGFVKAGDTFRLGGFGFVAFSPLIVTVL* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02274 681 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 676 IPR015683 -
Rops8g02274 681 Gene3D - 265 367 - -
Rops8g02274 681 Gene3D - 480 611 - -
Rops8g02274 681 FunFam Glutamate receptor 364 479 - -
Rops8g02274 681 Pfam Bacterial extracellular solute-binding proteins, family 3 393 664 IPR001638 -
Rops8g02274 681 FunFam Glutamate receptor 480 614 - -
Rops8g02274 681 SMART GluR_14 368 675 IPR001320 GO:0015276|GO:0016020
Rops8g02274 681 CDD GluR_Plant 369 680 - -
Rops8g02274 681 FunFam Glutamate receptor 89 258 - -
Rops8g02274 681 Pfam Ligand-gated ion channel 489 598 IPR001320 GO:0015276|GO:0016020
Rops8g02274 681 Gene3D - 87 258 - -
Rops8g02274 681 Pfam Receptor family ligand binding region 88 282 IPR001828 -
Rops8g02274 681 SUPERFAMILY Periplasmic binding protein-like II 345 671 - -
Rops8g02274 681 Gene3D - 368 479 - -
Rops8g02274 681 SUPERFAMILY Periplasmic binding protein-like I 43 360 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02274 Rops-Chr8 52317996 52322239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02274 81 677 Ion Channels AT5G11210 32.273 1.97e-95 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02274 - - mtr:11429954 858.981