Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02268 ATGAGGGCCTCCAGAAGAAGCATCACGTGGGGTTTAGCCAACAACAGCTTCAACCCTCTCGATTTCTCTCACTCACCTTCTTGGCACAAACACTGTCTCTATCTCTTCTCCCACCCTTTAGCAATGGCTCTTCTTCTAGATATTTATGAAGGTAATCCCGCCACCAATCATGTGGTTTCTTGGGGTGAAGACGACACCACCTTCGTCGTTTGGTGTCCTCCTGAGCTTGCTAGGGATCTTCTACCCAACTACTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAACTCAACACTTATGGTTTCAGAAAGATTGTGTCTGATGGATGGGAGTTTGCTAATGAATACTTCAAGAAAGGGAAGAAGCACTTGTTGTGTGAGATTCATAGAAGGGAAACAGCTCAACCTCAACAAGTATCTATGAATCAACATCATCATCCTCATATTGGACTCAACACCCCAAGCAAGGTTACCAACGAAGAGTTTGAGGTATGGGGAGCAGCTGGGTTTGCCTCCCTCATGGTCACAGTGAGTAGGTTGCTGCCACAACAAGTAGAGAAGTTGATGGCTACCTATCTAGGCACTCGAGTATGCAGCCCCAAAGAGAATTTGGGTCCATGGAGGAATGAGGTCGCACGAGTGGCTCTAGAACCATGCCCTGGGACTGTTTCTCCTGAGGGTACTCTTGTGCTGGCTGCAAACAGAACGAATAAGCCTGACATTCTATGGCGGTTTCATCGTTACTGA 747 0.4712 MRASRRSITWGLANNSFNPLDFSHSPSWHKHCLYLFSHPLAMALLLDIYEGNPATNHVVSWGEDDTTFVVWCPPELARDLLPNYFKHNNFSSFVRQLNTYGFRKIVSDGWEFANEYFKKGKKHLLCEIHRRETAQPQQVSMNQHHHPHIGLNTPSKVTNEEFEVWGAAGFASLMVTVSRLLPQQVEKLMATYLGTRVCSPKENLGPWRNEVARVALEPCPGTVSPEGTLVLAANRTNKPDILWRFHRY* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02268 248 Pfam HSF-type DNA-binding 52 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops8g02268 248 SUPERFAMILY "Winged helix" DNA-binding domain 52 131 IPR036390 -
Rops8g02268 248 SMART hsfneu3 37 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops8g02268 248 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops8g02268 248 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops8g02268 248 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops8g02268 248 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops8g02268 248 Gene3D - 42 132 IPR036388 -
Rops8g02268 248 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 52 190 IPR027725 -
Rops8g02268 248 FunFam Heat stress transcription factor B-4 40 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02268 Rops-Chr8 52211907 52212759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02268 51 186 HSF AT1G46264 61.074 2.54e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops8g02268 HSF_DNA-bind 2.3e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02268 K09419 - csav:115712240 187.578