Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02252 ATGGTGATGGTGAGTGAAGAACAAAAACGCAGCCCTATAAACCAAAAGAACCCGATGACACAGTCAAATAGCCAAAACATGGCTACCCTTTTAAGCCCAAGATTCAAATCCGCGGCTGCTATGGCTGGTTGGGATGAAGAGGCACTGTTACTGGCCAGCCTCATCGTGGAAGACACGCCAGTTAGAGATGCCAAACACAAGAAGCGCTCTGTTTTGAACTCCAAAACCCCACCCACCAATTCAAGAAGGAAACGCAGAGCTCAGAGGAGTCCCCAACCAATGCCCGTAGCTGTTCTTGATCTTGATGAAGAAGAAACTCCCAGAAAGGATAGTGGGAAAAAGAAGGAGGAAAAGAAAAATTGTGTCGGTGAAGGAAGTAAAGTAGGAGGAAATGAATCGACCCAGCCGAGCTCTAATGTCTCTTCAACCAGTTCTGCTCTTCCCTGCATTGATAAGCTCAGAGAGGAGCTTTCTTGTGCCATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAAATGTCTGCGATCTGCTGCAGATAAGTGTGGCAAAAAGTGCCCCAAATGCAGGCAATTGATAAGCAATGGAAGATCTTGCACTGTGAACACAGTTCTATGGAATACAATTCAGCTTCTTTTTCCTCAAGAAGTTGAAGCAAGGAAGGCGGCTGGTGCTTTAAATAGGCGAGAAGCTCAGTGTATGAGCCCACAAACAGCATTCTATAGTAACCTAATGAATAGAAGCACACAACCATATGTGGCATCAAGGAGAAGTGGAGCAACAACAACCCAGGAGGATGAGGATGCTGCATTGGCTAGAAGGTTACAGAGAGAAATTGATGGACAAAGCCACCAGGGAACAACAAGGGTGCACAATAATTCAAGGAATCAAACCTCATCATCAAGGGTAAGGATGAGAAGAGGGGTTTCTAGCCAAGATGAGGATTCTGCTTTAGCTCAAAGGTTGCAAAGAGAAGAGTTTATGCAAACTTATAGGGGAAGCCAGGAGCAATACAGCATGCCCTCCTCATCATTAGCTAGAGTGAATTTGAGGGCTATGGCATCTAGGGCCATGAATCTTCGTATTAGAGATCGAAGAATATAA 1128 0.4504 MVMVSEEQKRSPINQKNPMTQSNSQNMATLLSPRFKSAAAMAGWDEEALLLASLIVEDTPVRDAKHKKRSVLNSKTPPTNSRRKRRAQRSPQPMPVAVLDLDEEETPRKDSGKKKEEKKNCVGEGSKVGGNESTQPSSNVSSTSSALPCIDKLREELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAAGALNRREAQCMSPQTAFYSNLMNRSTQPYVASRRSGATTTQEDEDAALARRLQREIDGQSHQGTTRVHNNSRNQTSSSRVRMRRGVSSQDEDSALAQRLQREEFMQTYRGSQEQYSMPSSSLARVNLRAMASRAMNLRIRDRRI* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02252 375 MobiDBLite consensus disorder prediction 287 326 - -
Rops8g02252 375 ProSitePatterns Zinc finger RING-type signature. 174 183 IPR017907 -
Rops8g02252 375 MobiDBLite consensus disorder prediction 8 28 - -
Rops8g02252 375 SUPERFAMILY RING/U-box 151 222 - -
Rops8g02252 375 MobiDBLite consensus disorder prediction 62 145 - -
Rops8g02252 375 MobiDBLite consensus disorder prediction 127 145 - -
Rops8g02252 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 228 IPR013083 -
Rops8g02252 375 PANTHER UNCHARACTERIZED 320 367 - -
Rops8g02252 375 SMART ring_2 159 197 IPR001841 -
Rops8g02252 375 MobiDBLite consensus disorder prediction 1 28 - -
Rops8g02252 375 MobiDBLite consensus disorder prediction 289 314 - -
Rops8g02252 375 Pfam Zinc finger, C3HC4 type (RING finger) 159 197 IPR018957 GO:0046872
Rops8g02252 375 ProSiteProfiles Zinc finger RING-type profile. 159 198 IPR001841 -
Rops8g02252 375 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02252 Rops-Chr8 51845540 51847324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02252 151 201 C2H2 Transcription Factor Family AT5G39550 44.231 3.84e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02252 - - gmx:102666585 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02252 8 51845540 51847324 Rops8g02252 8 51845540 51847324 ECH