Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02245 ATGGGAAGAAAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCATAAGCTAGTGAACTTCATACTCAACAATGGCATTCATTGTTGGAGAACGGTTCCCAAACTTGCAGGTCTTCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATTTGAGGCCAGACCTTAAGAGAGGTGGCTTTACAGAAATGGAAGAGGATCAAATTATACAACTACATTCACGTCTTGGTAACAGGTGGGCTAAGATTGCTTCACATTTTCCTGGGAGAACAGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGCTAAAGCTCCTTGGTTTGGACCCTGTGACCCACAAGCCAATTGAGCAAAAGGAACACACTGATGAGGAAAAAAATTATGAGACCAACCTAGAGCCAAATATTTCTGAAGAAAATGTGGAGATTAAATCCGTGGACAGTGATGGCACCAAAGAAATGACTATAATAGAAGGGAAAAGAGAAGAAAACAAGGTGACTTGGGATGATACCACTGAACTTTTAAACAATTTTGAAATGCTATGCTCACAGTTGGATTTGGGATCATGGATGAGCCAAGAAACCAACACTACTAGTACTAACTCATTTTGTAGTTCTTCTGTCTCTCTGGATGATACTAGCCACCTTTCTATGGGTGAATCCCCTTCCCTTCAGGAAAATTCCTTACAGCAATGGGTTGATACTGGTATGGATTCAAATCTCTCATGGGATGGCTTCAATCCTTTTGACCAAGATATTTTCTTCATGGAAAATAGGGAATAA 822 0.399 MGRKPCCDKVGLKRGPWTIEEDHKLVNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSRLGNRWAKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKPIEQKEHTDEEKNYETNLEPNISEENVEIKSVDSDGTKEMTIIEGKREENKVTWDDTTELLNNFEMLCSQLDLGSWMSQETNTTSTNSFCSSSVSLDDTSHLSMGESPSLQENSLQQWVDTGMDSNLSWDGFNPFDQDIFFMENRE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02245 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops8g02245 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops8g02245 273 CDD SANT 16 61 IPR001005 -
Rops8g02245 273 FunFam MYB transcription factor 68 129 - -
Rops8g02245 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops8g02245 273 CDD SANT 70 110 IPR001005 -
Rops8g02245 273 SMART sant 66 114 IPR001005 -
Rops8g02245 273 SMART sant 13 63 IPR001005 -
Rops8g02245 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 214 - -
Rops8g02245 273 MobiDBLite consensus disorder prediction 209 236 - -
Rops8g02245 273 FunFam MYB transcription factor 11 67 - -
Rops8g02245 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops8g02245 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops8g02245 273 Gene3D - 69 166 - -
Rops8g02245 273 Gene3D - 11 67 - -
Rops8g02245 273 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Rops8g02245 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02245 Rops-Chr8 51673417 51674472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02245 1 148 MYB Transcription Factor Family AT5G16600 68.919 1.11e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g02245 Myb_DNA-binding 3.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02245 K09422 - gmx:100783231 471.855