Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02220 ATGGCTCACCTTTCATGCTTCCTTCTTTTGGGGCTCTCTCTTCTGACACCCAACGCTGTTTTCTCCTCAGCCATTCAAGACCCTGAGCTAGTTGTACAAGATGTACAAAGAAGCATTAATGCATCCAGAAGAAACTTGGGTTATTTTTCATGTGGAACTGGTAACCCCATTGATGATTGCTGGCGCTGTGACCCAAATTGGGAAAGCAACCGGCAAAGACTAGCAGATTGCGCCATTGGGTTCGGCAAAGACGCCATTGGAGGAAGAAATGGTAGAATCTACATTGTCACTGACTCTGGTGATGATGACCCTGTGAACCCCAAGCCAGGGACTCTGAGGCACGCTGTTATACAAGATGAGCCATTATGGATCATTTTCAAGAGGGACATGGTGATTAACCTTAAGCAAGAGCTTGTGATGAACTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGTGGTTGTATTACCATTCATTATGTGAGTAACATCATCATTCATGGCATTCACATTCATGATTGTAAGCCCACGGGGCATGCCTATATAAGAGACTCTCCTCGCCATTATGGATGGTGGACTATATCGGATGGTGATGGTGTGTCCATCTTTAGTTCAAGGCATATTTGGGTTGACCATTGCTCATTATCTAACTGCCATGATGGTCTCATTGATGCCATCCATGGATCCACAGCTATCACCGTCTCCAACAACCACATGACCCATCATAACAAGGTCATGCTCTTGGGCCACAGTGACTCCTACACACAAGATAAGGACATGCAGGTCACGGTAGCCTTCAATCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACATGGGTATTTTCATGTGGTGAACAATGATTACACTCATTGGGAAATGTATGCCATTGGTGGGAGTGCTAACCCTACCATTAACAGCCAAGGGAACAGGTTTCTTGCACCCGATAACAGCTTTAGCAAGGAGATAACCAAGCACGAGAATGCTCCACAGGATGAATGGATGCATTGGAACTGGAGGTCAGAGGGGGACATGTTCTTGAATGGAGCATATTTCACCCAATCTGGTGCAGGTGCTTCTTCTACATACGCTAGGGCAACAAGTCTGAATGTAAGACCATCTTTTCTAGTTGGCTCCATGACAGTGACTGCTGGTGCACTCAACTGCAGAAAAGGAACTCGTTGCTGA 1212 0.4596 MAHLSCFLLLGLSLLTPNAVFSSAIQDPELVVQDVQRSINASRRNLGYFSCGTGNPIDDCWRCDPNWESNRQRLADCAIGFGKDAIGGRNGRIYIVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVINLKQELVMNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGIHIHDCKPTGHAYIRDSPRHYGWWTISDGDGVSIFSSRHIWVDHCSLSNCHDGLIDAIHGSTAITVSNNHMTHHNKVMLLGHSDSYTQDKDMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNSFSKEITKHENAPQDEWMHWNWRSEGDMFLNGAYFTQSGAGASSTYARATSLNVRPSFLVGSMTVTAGALNCRKGTRC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02220 403 Gene3D - 54 396 IPR012334 -
Rops8g02220 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Rops8g02220 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Rops8g02220 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Rops8g02220 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Rops8g02220 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Rops8g02220 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Rops8g02220 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Rops8g02220 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Rops8g02220 403 PANTHER PECTATE LYASE 18-RELATED 26 401 IPR045032 GO:0030570
Rops8g02220 403 Pfam Pectate lyase 135 320 IPR002022 -
Rops8g02220 403 SUPERFAMILY Pectin lyase-like 37 374 IPR011050 -
Rops8g02220 403 SMART amb_all 129 326 IPR002022 -
Rops8g02220 403 FunFam Pectate lyase 54 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02220 Rops-Chr8 51162381 51165091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02220 2 403 Polysaccharide Lyase AT5G63180 73.645 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02220 K01728 - gmx:100794814 739.954