Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02199 ATGGCTAGGAGCTGGCTTATTGACATAGGAGGATTTGCAAAGAAAGTAAAAAGCACTACACTATCTTCAACTGATCAAATCAAAGATTGTGGGGCATATCGTGAATGCCCAAACTGTCATTATCATATTGATAACAGTGATGTTTCTACTGAGTGGCCGGGCTTTCCTGTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTGTTAGAACATTTGGCAGCAAAATGTGGCATTGGAGAGCCGCACATGTTTATCCATGAGTTCATCCCAACACTGGATGGAGACCAAGGTATTTGCTACACACATCCAGAAAATCTTCCCGGTGCTAAGAAAGATGGGAGCAGTGTCCATTTCTTTCACAGAACAATGAATGCATATACAACTGGTCAACGAAAGCGTCGAAAGATTCATCATCATGGTTTGACTGAAGAGCATGTACGCTGGCACAAGACTGGTAAGACCAAATCTGTAATAGAAGATGGAGTACACAAGGGCTTTAAGAAGATCATGGTTCTTTATATAAGATCTAAGAAAGGGTCCAAGTCCTATAAATCCAATTGGATAATGCATCAGTATCATCTAGGGACCGAAGAAGATGAGAAGGATGGTGAATATGTGGTTTCAAAAATTTTTCATCAACAGCAAAAGCAGACTGAGAAAATTGAGGAGAATTCAATGGCTGAAGGTTCTGAGAATATAACGTTGGGTACAAGTCCAAAGACTCCAAAACCAAATCCCCCCAATCCACCTCGCACAGGAAAATGTGTTGATTTTGATGATATTATTGATGAAACTGCACTTTTGTCATTTGCCCAGGATGCCAAGCCTATCCCTGGAGAATCACATGCCCCAATATCTGATATTCAGGATCAGGACATAACAGGCAACCCTGCATGGTTGGCTGGTGAATCACAGGCTGTGGAAAACTTTGAATATGATGGCTTGGATGACATATTATTGTGCAAGGAGATTTTAGATTCTTCTGCTCTATTAAATGACACTGAATTGGACTCTGCCACTCTCAATTGCTTTGCTCGCTATGAAAATGAAATGGCTGGAAATGATATTGTAACTTCTGGAATTTCTGTTCTGGATACACTGGAATTGGATACTCCTCCAGATTTTGATCTTTCTAATTTGAATTTTTGTTCTCAAGACAGTATCCTTGAGTGGATGGACAGGCTATGA 1188 0.4032 MARSWLIDIGGFAKKVKSTTLSSTDQIKDCGAYRECPNCHYHIDNSDVSTEWPGFPVGVKFDPSDVELLEHLAAKCGIGEPHMFIHEFIPTLDGDQGICYTHPENLPGAKKDGSSVHFFHRTMNAYTTGQRKRRKIHHHGLTEEHVRWHKTGKTKSVIEDGVHKGFKKIMVLYIRSKKGSKSYKSNWIMHQYHLGTEEDEKDGEYVVSKIFHQQQKQTEKIEENSMAEGSENITLGTSPKTPKPNPPNPPRTGKCVDFDDIIDETALLSFAQDAKPIPGESHAPISDIQDQDITGNPAWLAGESQAVENFEYDGLDDILLCKEILDSSALLNDTELDSATLNCFARYENEMAGNDIVTSGISVLDTLELDTPPDFDLSNLNFCSQDSILEWMDRL* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02199 395 Gene3D NAC domain 64 218 IPR036093 GO:0003677|GO:0006355
Rops8g02199 395 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 308 IPR044799 GO:0003700
Rops8g02199 395 MobiDBLite consensus disorder prediction 216 252 - -
Rops8g02199 395 FunFam NAC domain-containing protein 8 64 217 - -
Rops8g02199 395 Pfam No apical meristem (NAM) protein 56 194 IPR003441 GO:0003677|GO:0006355
Rops8g02199 395 ProSiteProfiles NAC domain profile. 55 213 IPR003441 GO:0003677|GO:0006355
Rops8g02199 395 SUPERFAMILY NAC domain 39 213 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02199 Rops-Chr8 50721796 50725922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02199 33 215 NAC Transcription Factor Family AT4G28500 52.941 1.87e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g02199 NAM 6.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02199 - - aprc:113859476 633.254