Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02168 ATGAGTTTCTTGCAGGGAATCCTTGATTCCTTAAACTCAATCTTCTCTCCTGATAACAATATTAATAACAATTCTTCTTCTGAAAATAATCTAAGTGCTTCTTCACCAATGGAACCTTCTCCTTCTCCTTCTTCTTCGGTTTCCAATGAACGTGTCGCTTACAAGCTAAAAGGGTACTTCGATTTGGCAACGCAAGAGATCGCCAAAGCTGTTAGAGCTGAAGAATGGGGTTTGATCGATGATGCTCTTCTTCACTATAGAAACGCCCAAAGGATCCTTCTAGAAGCTAATTCTACTCCTGTTCCTTCCTTCATCACTTCCAGTGAACAACAAAAGGTACAATCGTATCGTCAAAAGATATCAAAATGGCAGGGCCAAGTTTCTGAGAGATTACAGACTCTCAGTAGACGAGCAGGTAGCACATCAGCCAATCAGAGCACCTCAAACCTCGCACAAACTGCTGCAGTTCCAATTAAACCATCAAATACTAAAAAAAATGTGTTACAAAAGTATCCCCAAAGAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCTAGTCCAGCGTCTGGTGTAAATTATGACACAAAACTGGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATGTTGCTGGCCTTGAGAAGGCGAAGCAAGCTTTAATGGAAATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAAAGGTTTGCTTCTTTTTGGTCCTCCTGGTAATGGAAAGACCATGCTTGCAAAAGCAGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACGGCCGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGAACACTATTCATGGTAGCTATATCCAGACAACCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAATTTGACGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCAACCAATAAACCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACGTACCTTTGCCAGATGAAAATGTCCGGAAACTTCTGCTAAAACACAAGCTCAAGGGTCAAGCATTCTCCTTACCTAATAGAGATCTAGAGATGCTTGTAAAAGAGACAGAAGGATATTCTGGAAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCCATTAGAGAGCTGGGTTCCAACATTCTTACTGTTGAGGCAAATCAGGTAAGAGGACTGAGGTTTGAGGATTTCAAGAAAGCAATGGCTATCATCAGACCAAGCTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGTTGGAATGAGGAGTTTGGCTCTAATTGA 1464 0.4092 MSFLQGILDSLNSIFSPDNNINNNSSSENNLSASSPMEPSPSPSSSVSNERVAYKLKGYFDLATQEIAKAVRAEEWGLIDDALLHYRNAQRILLEANSTPVPSFITSSEQQKVQSYRQKISKWQGQVSERLQTLSRRAGSTSANQSTSNLAQTAAVPIKPSNTKKNVLQKYPQRTGQVNKVGSPKSSPASGVNYDTKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPAKGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLKHKLKGQAFSLPNRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTVEANQVRGLRFEDFKKAMAIIRPSLNKSKWEELERWNEEFGSN* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02168 487 CDD RecA-like_spastin 217 380 - -
Rops8g02168 487 Gene3D - 211 481 IPR027417 -
Rops8g02168 487 SMART AAA_5 248 384 IPR003593 GO:0016887
Rops8g02168 487 PANTHER AAA DOMAIN-CONTAINING 110 486 - -
Rops8g02168 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 484 IPR027417 -
Rops8g02168 487 ProSitePatterns AAA-protein family signature. 354 373 IPR003960 GO:0005524|GO:0016887
Rops8g02168 487 Gene3D - 48 138 - -
Rops8g02168 487 SMART smart 56 133 IPR007330 -
Rops8g02168 487 Pfam AAA+ lid domain 407 441 IPR041569 -
Rops8g02168 487 FunFam AAA-type ATPase family protein 49 138 - -
Rops8g02168 487 Pfam ATPase family associated with various cellular activities (AAA) 252 382 IPR003959 GO:0005524|GO:0016887
Rops8g02168 487 FunFam AAA-type ATPase family protein 383 465 - -
Rops8g02168 487 CDD MIT_spastin 56 134 - -
Rops8g02168 487 MobiDBLite consensus disorder prediction 18 48 - -
Rops8g02168 487 FunFam Spastin, putative 211 395 - -
Rops8g02168 487 Pfam Vps4 C terminal oligomerisation domain 453 485 IPR015415 -
Rops8g02168 487 Gene3D - 383 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02168 Rops-Chr8 50174896 50181779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02168 193 437 Calmodulin-binding Proteins AT3G56690 41.833 3.75e-48 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02168 K13254 - gmx:100780946 818.15