Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02157 ATGAGTCTAAACTCTAGTGGTAGCGGTGGTAGTGGTGGCGGTGGCGGCAGTGGTGGTGGTGGAAATAGTGGTAGCCCTTGTGGTGCTTGCAAGTTCTTGAGGAGGAAGTGTGTGGCAGGGTGCATCTTTGCTCCATACTTTGATTCTGAGCAAGCGGTGCATAAGGTTTTTGGGGCTAGCAATGTATCCAAGCTTCTTCTCAATATTCCTATGCATAGGAGGCTTGATGCTGTGATCACCATTTGTTATGAAGCACAATCAAGGTTGAGAGATCCTGTTTATGGTTGTGTTGCACATATCTTTGCCCTTCAGCAACAGGTGATGAGTTTACAAGCAGAACTTTCCTACTTACAAGGCCACCTTACAACAATGGAGTTACCCCATCCACCACCACCACCACCCCCTCCTCCACCGCAAGCAGCAGTGGCGCCACCGGCTTTCACAATTGCCGACCTACCCTCCGCCACTGCAGCAACCGTGCCAACCACCTATGATTTATCTTTACTTTTTGAGCCAATGGCCCAAACTTCATGGGCCACGCAACATAGGGCTATGGACCCACGTCAATTCTTGGCTGCAGGCCCATCATCAACTACTAGTGGTGCTCTTCAAGCAGTGGCACGTGACCTTTCTCATAGACATCATGGGTCGCTACCTGCACCTCACGTGCCATCCTCCACCTCCAATGCCTCATCATCATCTCTATCTCTTTCTAAATGA 720 0.5 MSLNSSGSGGSGGGGGSGGGGNSGSPCGACKFLRRKCVAGCIFAPYFDSEQAVHKVFGASNVSKLLLNIPMHRRLDAVITICYEAQSRLRDPVYGCVAHIFALQQQVMSLQAELSYLQGHLTTMELPHPPPPPPPPPPQAAVAPPAFTIADLPSATAATVPTTYDLSLLFEPMAQTSWATQHRAMDPRQFLAAGPSSTTSGALQAVARDLSHRHHGSLPAPHVPSSTSNASSSSLSLSK* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02157 239 MobiDBLite consensus disorder prediction 1 21 - -
Rops8g02157 239 MobiDBLite consensus disorder prediction 221 239 - -
Rops8g02157 239 MobiDBLite consensus disorder prediction 191 239 - -
Rops8g02157 239 ProSiteProfiles LOB domain profile. 25 121 IPR004883 -
Rops8g02157 239 PANTHER LOB DOMAIN CONTAINING PROTEIN 23 131 - -
Rops8g02157 239 Pfam Lateral organ boundaries (LOB) domain 26 118 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02157 Rops-Chr8 49955346 49964185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02157 29 232 AS2 family AT4G00220 55.869 2.11e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops8g02157 LOB 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02157 K21994 - gmx:100790517 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02157 8 49955346 49964185 Rops8g02157 8 49955346 49964185 ECH
Rops8g02157 8 49955346 49964185 Rops4g01290 4 34246698 34249936 PCT