Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02146 ATGGGAAAGAAGGTGAAACTTGCTTTCATGATCAATGATTCTGAAAGGAGGATATCATACAGGAAAAGGAAAAAGAGTTTAATGAAGAAGATGGATGAACTCACCACCCTCTGTGGGATCGAGGCTTGTGCTATAGTTTATAATGAATTCGATCCTTGGCCTGAGGTTTGGCCATCCCCATTGGAGGTTGAAAAGTTTATCACCAAGTTCAGAAATTATTCTGAATTTGATCTTGGCAAGAATAAAAAGAAGCTGGACCATGAGAGCTATATAAAGCAGAGAGTTCTCAAGGCCAAAGAGCAATTAGTGAAGATGAAGAAGAATAATAGGGAGAATGAGATTTCCTTCCTAATGTTTCAATATCTTGCAGGAGTAAATATTTTGGACAATCTCAACATGGTTGATTTGAATGATCTAACATGGCTCGTTGACGAGAAGCTGAAAGAGATTAGTTGGAGGAAGGTCGAATTGGACAAGAAGGCTTCAACATCTCAAAGCCAAGCTCATATGATGACATCAAGGGTGGTAGATGGAGCAACTGGCCAAGGAAACGAGGCACAGGTGGATCTTGACCTAGGGTTTAAGATGAACCTAGATGATACACTAGATCTACAATTGATTTTGAACTCATTCAATGATTTAGATAATGCAATGCCACCATTTCAATTACCATAA 675 0.3896 MGKKVKLAFMINDSERRISYRKRKKSLMKKMDELTTLCGIEACAIVYNEFDPWPEVWPSPLEVEKFITKFRNYSEFDLGKNKKKLDHESYIKQRVLKAKEQLVKMKKNNRENEISFLMFQYLAGVNILDNLNMVDLNDLTWLVDEKLKEISWRKVELDKKASTSQSQAHMMTSRVVDGATGQGNEAQVDLDLGFKMNLDDTLDLQLILNSFNDLDNAMPPFQLP* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02146 224 PANTHER MADS BOX PROTEIN 3 149 - -
Rops8g02146 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Rops8g02146 224 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops8g02146 224 CDD MADS_SRF_like 1 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops8g02146 224 Gene3D - 12 97 IPR036879 GO:0003677|GO:0046983
Rops8g02146 224 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Rops8g02146 224 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02146 Rops-Chr8 49680731 49681405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02146 3 184 Type I MADS-box Gene Family AT5G48670 43.956 1.83e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops8g02146 SRF-TF 4.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02146 - - lja:Lj1g3v2809220.1 194.897