Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02145 ATGGGAAAGAAGGTGAAACTTGCTTTCATGATCAATGATTCTGAAAGGAGGATATCATACAGGAAAAGGAAAAAGAGTTTAATGAAGAAGATGGATGAACTCACCATCCTCTGTGGGATCGAGGCTTGTGCTATAGTTTATAATGAATTCGATCCTTGGCCTGAGGTTTGGCCATCCCCATTGGAGGTTGAAAAGTTTATCACCAAGTTCAGAAATTATTCTGAATTTGATCTTGGCAAGAATAAAAAGAAGCTGGACCATGAGAGCTATATAAAGCAGAGAGTTCTCAAGGCCAAAGAGCAATTAGTGAAGATGAAGAAGAATAATAGGGAGAATGAGATTTCCTTCCTAATGTTTCAATATCTTGCAGGAGTAAATATTTTGGACAATCTCAACATGGTTGATTTGAATGATCTAACATGGCTCGTTGACGAGAAGCTGAAAGAGATTAGTTGGAGGAAGGTCGAATTGGACAAGAAGGCTTCAACATCTCAAAGCCAAGCTCATATGATGACATCAAGGGTGGTAGATGGAGCAACTGGCCAAGGAAACGAGGCACAGGTGGATCTTGACCTAGGGTTTAAGATGAACCTAGATGATACACTAGATCTACAATTGATTTTGAACTCATTCAATGATTTAGATAATGCAATGCCACCATTTCAATTACCATAA 675 0.3881 MGKKVKLAFMINDSERRISYRKRKKSLMKKMDELTILCGIEACAIVYNEFDPWPEVWPSPLEVEKFITKFRNYSEFDLGKNKKKLDHESYIKQRVLKAKEQLVKMKKNNRENEISFLMFQYLAGVNILDNLNMVDLNDLTWLVDEKLKEISWRKVELDKKASTSQSQAHMMTSRVVDGATGQGNEAQVDLDLGFKMNLDDTLDLQLILNSFNDLDNAMPPFQLP* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02145 224 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops8g02145 224 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Rops8g02145 224 PANTHER MADS BOX PROTEIN 3 149 - -
Rops8g02145 224 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Rops8g02145 224 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Rops8g02145 224 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Rops8g02145 224 Gene3D - 12 97 IPR036879 GO:0003677|GO:0046983
Rops8g02145 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Rops8g02145 224 CDD MADS_SRF_like 1 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops8g02145 224 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02145 Rops-Chr8 49620576 49621250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02145 3 184 Type I MADS-box Gene Family AT5G48670 43.407 1.16e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops8g02145 SRF-TF 5.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02145 - - lja:Lj1g3v2809220.1 192.586