Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02142 ATGGCTGCTTGTGCTTTGTTCAGTGGTGGTGGTAATAGTACTGAAGATGGCAATGGTGGAAGTGGTGGTAGTCCTTTGACTACTAGTGCTTCTAACTCAAACAACATGAGTGGTGAAGAACAACAACACACTCTACATGGCATGCCCCAACCTCATTGTGAAAGGAAAATGGTGAGAAAGAGAATGGCTTCCGAGATGGAACTTCATGCTACCCCACCACATAACCCTTCTTCATCCACCAGTGATTATCCTAGGTTTCCTCGTAGAAGCAACACCAACATGTCCTCTTTGAATTGCTGTTTACCAGCCACAGGAAAAGGGGTCACAACCACAACAATAACAACAACAACGTTAGCCGCAGGTACTTGTAATAATAACTATCATTATAATAATAGTAATAGTAGTAGTAATAATAATAATAATAATAATAATAGTCATAATAACATTGCTTTTTCAAGAGATAATGTTTCTATTCCAAATTACCCCACTGTGACGGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCACCGTCAATTCCTCTAGCTCCTTACCCTCCAATACTACCATTACTGCTCCTATCTACAGTAATCACCATCATTTCCAAGCACTTGAGGGTCAAAACCAGGATCAAAACCCTGTGCCTGCAGTGTGTGGATTCTCAGGTTTGCCACTTTTTCCATCTCAAAGCCAAAGAAATAACAACAACAACAACAGCAGCAGCATCAGAAGCAGTAATAGTAGCAATATTGTTGATGTGGTTGCTTCTCCCTCCATGGAAGATACATCAGCTACAACTAATTGGATCGATGGTATATTGAAAGATCTTATTCACAGTTCCAACAGTGTTTCCATTCCTCAACTCATGAGCAACGTGAGGGAGATAATATATCCTTGTAACCCCAACCTTGCAGTGGTTCTTGAACACAGGTTGCGCCTTCTCACCGAGTCCACCACTACCCCACCAAACTCTTGTAAAAGGAGCACAGAAGGGGTTGTTGTGCCTCCTAATGTGAAGCTCATGAATCGTGTGGATGGCATTGTTCCAAGTTTACAACATTTCCCTGATTCATCTGTTGTGAATCAAAACATGTTTCCCAATTGGGGTGTGCCTCCAATCACCACCACCACACTCCACCACCAAGACCACAACAACCCTTCAGTTTCTTTGGTTACTTTACCTTCACCACCATCCACAAACCAAGGTTATTCACCACCACAAGAGAAGCAGAAGCAGCCTCAGCATGAGGAAGATCTTGCAGCAGCAGCAGCAGCAGCAACTAGCAGTGCTGAGATGGTGTTAACAAGAAAGAAGAAAGAGGAGTTAAGGGAACAGAAGAAGAAAGATGAAGAGGGTTTGCACCTTCTCACCTTGCTTCTTCAATGTGCAGAAGCAGTTTCAGCTGAGAATCTAGAAGATGCAAACAAGATGTTGCTTGAGATTTCCCAACTCTCCACACCATTTGGAACATCAGCACAACGTGTAGCAGCTTATTTCTCAGAAGCAATATCAGCAAGGCTAGTGAGTTCATGCTTGGGAATATATGCAACACTTCCACATACCCACCAAAACCACAAGGTTGCATCAGCTTTCCAAGTCTTCAATGGAATTAGTCCATTTGTAAAGTTCTCACACTTCACTGCAAACCAAGCTATACAAGAAGCTTTTGATAGGGAAGACAGGGTGCACATCATAGATCTGGATATAATGCAAGGTTTGCAGTGGCCTGGACTCTTTCACATTCTAGCTTCAAGACCTGGTGGACCCCCTTATGTCAGGCTCACGGGATTAGGTACCTCCATGGAAGCCCTTGAAGCCACCGGCAAGCGTTTGTCTGATTTTGCTACTAAACTTGGTCTTCCCTTTGAGTTCTTTCCCGTGGCTGACAAAGTTGGGAACCTTGACCCTGAGAGCCTCAACGTGGGCAAGACTGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGATCCGATACAAACACTTTGTGGCTCTTGCAGAGGTTGGCACCTAAAGTGGTGACAGTGGTAGAGCAAGACCTTAGCAATGCAGGTTCTTTCTTGGGAAGGTTTGTGGAAGCCATACACTACTACTCAGCATTATTTGATTCACTTGGTTCTAGCTATGGGGAGGAAAGTGAAGAGAGACATGTGGTGGAGCAGCAGCTACTTTCTAGGGAGATTCGTAATGTGCTTGCAGTTGGGGGACCATCAAGAACTGGGGAGATCAAGTTCCATAACTGGAGGGAAAAGCTTCAACAATGTGGGTTTAGGGGTATCTCACTAGCTGGTAATGCTGCCACACAAGCTAGTTTGCTACTTGGTATGTTCCCTTCTGAGGGGTATACCTTGGTGGAGGATAATGGTATTCTCAAACTTGGTTGGAAAGATCTTTGTTTGCTCACTGCTTCAGCTTGGAGACCATCCTACCATAGTAGCACTGCCATTGCCCATCATAACTAA 2481 0.4418 MAACALFSGGGNSTEDGNGGSGGSPLTTSASNSNNMSGEEQQHTLHGMPQPHCERKMVRKRMASEMELHATPPHNPSSSTSDYPRFPRRSNTNMSSLNCCLPATGKGVTTTTITTTTLAAGTCNNNYHYNNSNSSSNNNNNNNNSHNNIAFSRDNVSIPNYPTVTVTTNYSTMLLPSSTVNSSSSLPSNTTITAPIYSNHHHFQALEGQNQDQNPVPAVCGFSGLPLFPSQSQRNNNNNNSSSIRSSNSSNIVDVVASPSMEDTSATTNWIDGILKDLIHSSNSVSIPQLMSNVREIIYPCNPNLAVVLEHRLRLLTESTTTPPNSCKRSTEGVVVPPNVKLMNRVDGIVPSLQHFPDSSVVNQNMFPNWGVPPITTTTLHHQDHNNPSVSLVTLPSPPSTNQGYSPPQEKQKQPQHEEDLAAAAAAATSSAEMVLTRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQNHKVASAFQVFNGISPFVKFSHFTANQAIQEAFDREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFATKLGLPFEFFPVADKVGNLDPESLNVGKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEIKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPSYHSSTAIAHHN* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02142 826 MobiDBLite consensus disorder prediction 69 89 - -
Rops8g02142 826 MobiDBLite consensus disorder prediction 377 419 - -
Rops8g02142 826 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 415 808 IPR005202 -
Rops8g02142 826 MobiDBLite consensus disorder prediction 11 44 - -
Rops8g02142 826 MobiDBLite consensus disorder prediction 71 89 - -
Rops8g02142 826 ProSiteProfiles GRAS family profile. 448 813 IPR005202 -
Rops8g02142 826 MobiDBLite consensus disorder prediction 1 51 - -
Rops8g02142 826 MobiDBLite consensus disorder prediction 377 411 - -
Rops8g02142 826 Pfam GRAS domain family 458 813 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02142 Rops-Chr8 49581580 49585105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02142 415 814 GRAS Transcription Factor Family AT3G54220 82.426 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops8g02142 GRAS 2.4e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02142 - - gmx:100806779 1110.13