Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02139 ATGGGCAACTGTGGTACCAGAGAAGAATCCGCCGTTGTCTCCAATGCTCAAGTTCATCAGCTTCATCATCATGTGTCGTCGTTGGGCGGCGCCGCCACCGAGAAGAAGCACAGTCTGAGAGAGTCTCTTTCGGATCTGAGCGAGTCTTGTTCTTCAACACCTCGCGGTTTCAACAATAACAGCAACACGCTTCTTTATACTCACGTGATCGCTTTCACGCTTTACGAGCTTGAGACCATAACGAAGAGTTTCCGTGGAGACTATATCCTCGGTGAAGGAGGGTTCGGAACTGTTTACAAAGGTTACATTGACGAGAACGTTAGGGTTGGACTCAAGTCACTCCCTGTAGCCGTTAAAGTCTTGAACAAGGAAGGACTACAAGGACATCGAGAGTGGCTCACGGAGGTGAATTTTCTGGGGCAGCTAAGGCATCCTAATCTGGTCAAGTTGATTGGTTACTGCTGTGAGGATGATCATAGGTTGCTTGTCTATGAGTTCATGTTTCGAGGAAGTCTAGAAAATCACCTATTCCGAAAGGCAACTGTCCCTTTATCATGGTCTACAAGAATGATGATTGCTCTTGGTGCTGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCAGTAATCTATCGTGACTTCAAAACGTCTAATATATTGTTGGACTCTGACTATACAGCCAAGCTTTCTGATTTCGGGCTAGCTAAAGCAGGACCACAAGGTGATGAAACCCATGTATCCACCCGAGTAATGGGTACCTATGGTTATGCTGCACCTGAATATGTAATGACTGGCCACCTGACTGCTAGGAGTGATGTGTATAGCTTTGGGGTTGTTCTTTTGGAGCTATTAACGGGAAGGAAGTCTGTTGACAAGACAAGACCTGGAAAGGAACAGAGCCTTGTAGATTGGGCACGGCCAAAGCTCAATGACAAGAGAAAGCTCCTACAAATAATTGATCCTAGATTGGAGAATCAATACTCAGTGAGGGCAGCACAGAAAGCATGTAGCTTGGCTTACTACTGTTTGAGTCAAAACCCCAAAGCGAGGCCGCTAATGAGTGATGTAGTTGAGACATTGGAACCCTTACAAAGTTCTAGTGTTGGTGCAGGTGTAGTCTCGTTATCAGGATCAAATAGTGTGAGTGCCGGGCCTTTTGCCATGAGCAAAATCTCTGACTATCGGATGCGTCACAAGTATCCAAACAATGTTGGTCCGGGTGCTATTTGTCGGTCTCCAAACCCAAATTGCTCACCAGGTGCTCCAGCAGCATGCCGGGTCAGATGA 1290 0.4674 MGNCGTREESAVVSNAQVHQLHHHVSSLGGAATEKKHSLRESLSDLSESCSSTPRGFNNNSNTLLYTHVIAFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWSTRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGAGVVSLSGSNSVSAGPFAMSKISDYRMRHKYPNNVGPGAICRSPNPNCSPGAPAACRVR* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02139 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Rops8g02139 429 FunFam Probable serine/threonine-protein kinase PBL8 167 378 - -
Rops8g02139 429 PANTHER OS01G0588500 PROTEIN-RELATED 52 365 - -
Rops8g02139 429 CDD STKc_IRAK 90 364 - -
Rops8g02139 429 ProSitePatterns Protein kinases ATP-binding region signature. 90 119 IPR017441 GO:0005524
Rops8g02139 429 Pfam Protein tyrosine and serine/threonine kinase 89 361 IPR001245 GO:0004672|GO:0006468
Rops8g02139 429 Gene3D Phosphorylase Kinase; domain 1 46 166 - -
Rops8g02139 429 SUPERFAMILY Protein kinase-like (PK-like) 58 362 IPR011009 -
Rops8g02139 429 FunFam Serine/threonine-protein kinase BIK1 51 166 - -
Rops8g02139 429 Gene3D Transferase(Phosphotransferase) domain 1 167 372 - -
Rops8g02139 429 ProSiteProfiles Protein kinase domain profile. 84 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02139 Rops-Chr8 49544033 49548221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02139 58 371 Glycoside Hydrolase AT3G07070 52.038 6.58e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops8g02139 PK_Tyr_Ser-Thr 4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02139 - - gmx:102662348 766.533