Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02129 ATGGCTGCAAATTCCGAGAATGACTCGTATGTGTCGTCTCAGTCTATTTCGCATGTTCATGAGGGCACTGATTCTGTCCAGGTTGCAGTGTGTTCTCTTTGCCAAAAGGCCCTATTGCCCGATAATGAGATGGCAAATGATGTTGCAACCAGTGGCGTATGTGGTGATTGTAAATTTTTATTACATGAAGACTTTGTGAATCATTCGATTACCCAAAGCTCTCGAAGGAGGCTTAGAGGAAGATTCAGGCACAACAGTTCTGAATCAGTTGAAAATGTTTTATTGCAACAGCCCCCCCATTTGGTTAATACTGTGAGGCAAAACCAATCCACTGCATCTGCGGAGGATGATCAACTTATTGATGGTGATACCCCTGCTTGGTCGTTGCAGTATGCTAGTGCTCATACTACCCCTAGTGGATCTAGACGCTGGAGGCAGGTTCTCTCTGATACTGACAGTGATGGTTTTGATAATTGGAGTTCTCTTTATGGTGAAAATGAATCAAGTGCGAGTTTTAGACAGTATAGGGTTCCACATGGTGAGACTGATTCTTTCTCGTTCAGTGCTTATGGAGGTGACTCGGATATCTCTATGGATAGACGTAGTTCTGGAGGCACTGGAATGTTCAATTTACCAGATGAGGGTGATGACTTTGATAGTGACACAGACATTGATCCAATGCATGCTGGCCTCAGCCAATGGAACTCAGATGATATGGAAGATGATGAGGAAGAGGAAGATGAAGATGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGGGAGTGGGAACTAGCTGAGGCTGATGAAGCTGAAGCTACAGCTCGCCTTCAAATTTTTTTGACCTCAAGCCCAAGTGAGAGCAGGGCCCAGATTAACTGGGAACAAAGGTTTAATTCTACTGATTCCGAGGGAATATTTAGCCAGATAATCAGGGATACCTGGCAAGCTTTGGAGGATGCTGATTTACCTCGTGGAGCAAGCTTTGGGGATTATATTGATACTAGACGCTTTGAAGATCTGCTTGAGCGTCTGGCTGAAAATGACAACTCAAGACGAGGAGCACCTCCTGCTGCTGTGTCTTTTGTGAATAATCTGCCCTGTTTAGTCATTGGCAAGGAACATGAGAAGCATGGCGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGGCCCCTGGCACTGAAGTACATCAGCTTCCCTGTTCTCACCTGTATCACACCTATTGCATTTTGCCATGGTTGAGAGCACGAAATTCGTGCCCTCTTTGTCGTTATGAGCTTCCAACTGATGATAAGGATTATGAAGAGGGAAAACATAACATTGATGGTAGAAATGTGATCCATGAGGGGCAGCAACTAAATGTGATGGATGATAGCTCCTCTGATGTTTCTGATGGAGCTGAAGTGAGTGAAGAGGATGGTACTACTCAAGGTGGAATACAGCAGAGAGGAGTTGTGAGCATGGATTCTACCACGAATTCTTCTGCAATAAGAGGTGGTAGAGGAAGATGGTTTTTTCTCGCTGCAGCTCCAATTGTTAGTCTAGTGGGCATGGTTCTTGTCTTGTGGTTAGGTAGCAACTCTCGTATTGAAGAAAGTAGGCATCTGGGTGGTGGCTACTTATCTGGGCAAAATCAGCATGCGGTTCATGTTTATGCCTCCCAGAACCCAAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCCTTCTAA 1713 0.4542 MAANSENDSYVSSQSISHVHEGTDSVQVAVCSLCQKALLPDNEMANDVATSGVCGDCKFLLHEDFVNHSITQSSRRRLRGRFRHNSSESVENVLLQQPPHLVNTVRQNQSTASAEDDQLIDGDTPAWSLQYASAHTTPSGSRRWRQVLSDTDSDGFDNWSSLYGENESSASFRQYRVPHGETDSFSFSAYGGDSDISMDRRSSGGTGMFNLPDEGDDFDSDTDIDPMHAGLSQWNSDDMEDDEEEEDEDGEEEEEEEEEEEREWELAEADEAEATARLQIFLTSSPSESRAQINWEQRFNSTDSEGIFSQIIRDTWQALEDADLPRGASFGDYIDTRRFEDLLERLAENDNSRRGAPPAAVSFVNNLPCLVIGKEHEKHGELVCAICKDVLAPGTEVHQLPCSHLYHTYCILPWLRARNSCPLCRYELPTDDKDYEEGKHNIDGRNVIHEGQQLNVMDDSSSDVSDGAEVSEEDGTTQGGIQQRGVVSMDSTTNSSAIRGGRGRWFFLAAAPIVSLVGMVLVLWLGSNSRIEESRHLGGGYLSGQNQHAVHVYASQNPRESRSRRWWCPF* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02129 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 431 IPR013083 -
Rops8g02129 570 MobiDBLite consensus disorder prediction 236 267 - -
Rops8g02129 570 FunFam E3 ubiquitin-protein ligase RING1-like 345 431 - -
Rops8g02129 570 CDD RING-H2_PA-TM-RING 383 425 - -
Rops8g02129 570 MobiDBLite consensus disorder prediction 458 480 - -
Rops8g02129 570 Pfam Ring finger domain 384 425 IPR001841 -
Rops8g02129 570 ProSiteProfiles Zinc finger RING-type profile. 384 425 IPR001841 -
Rops8g02129 570 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 249 429 - -
Rops8g02129 570 SMART ring_2 384 424 IPR001841 -
Rops8g02129 570 Coils Coil 236 275 - -
Rops8g02129 570 MobiDBLite consensus disorder prediction 196 267 - -
Rops8g02129 570 SUPERFAMILY RING/U-box 374 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02129 Rops-Chr8 49431392 49434001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02129 23 570 C3H Transcription Factor Family AT5G01980 43.386 1.48e-121 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02129 - - gmx:100797923 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02129 8 49431392 49434001 Rops8g02129 8 49431392 49434001 ECH