Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02126 ATGATTCGCCTTCGCAGAATTAGGGTTAGGGATTTGGCTCCAATGGAAGGGAGTGCTGACATATTCAGAGCTTCTCCGGTGACTGGAGCTTCGTCGTCGTCGTCCTCATCTTCCTCTAATTCGAGAAGATACGGATTCTTATCGGCGTCGAACATAATCCAGGCACCGTTATCGGTGTTATTGGAATATTCCGGTATTCTCCCTTCAAGGTCAAACCACCACCACCACCAACCTAACCCCGACACCGCCGTCCCCAACGACGGCGAGGTCTCAATTAGGATCATTGGTTCCGCGGAACATGATCATCATAGGGAAGAACAGCCTCCTCCTAATGGTGGTGGTGGTGGTTTGGTGGTGGGGAATGATGCTGCTACAATTCCCTCTTCACCTTCACATGGTGATGGGGAGGGTGCTTCAAGGACGGGGAGTGGAAATTCTGATGCTGAAGCCGGTGGTGGTGATGGAGTTGGGTCAAATGGGAGGGATTCTTCTTACCAGAGATATGATATTCAGCATGCTGCTAGGTGGATTGAGCAAGTCTTGCCCTTTTCTTTGCTTCTCTTGGTGGTCTTCATAAGGCAGCATTTGCAAGGGTTTTTTGTTACAATTTGGATTGCCGCTGTGCTTTTCAAGTCAAATGACATTCTTAGGAAACAAACAGCCCTGAAGGGAGAGAGGAAAATACCTGTTCTAATTGGAATTGCTGTTGCTTTCACACTTCACGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTGATGTATCCGTTGGTCATGCTTCCTCCCAAAGACATACCGCCTTTCTGGCATGCTATTTTCGTCATCATGGTGAATGATACTTTGGTCCGCCAGGCTGCTATGGTAGTCAAGTGTATGTTGTTAATGTATTACAAGAACAGCAGAGGCCGAAATTATCGTAAGCAGGGGCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCGTCACTGATGACTGGATTGTATCTAACATTTAAGCTTACATCTGTTGTCGAAAAGGTGCAATCTTTCTTTGCTGCAGTGAAGGCATTGTCCCGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGTCAGGAAAAGATGCATGCCCCAATCTTACTTCGTTGTAAACACATTTTCTGTGAAGACTGTGTATCAGAATGGTTTGAGAGAGAAAGGACGTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTCAGGTCATTTGGTGATGGCTCTACTAGTTTGTTTTTCCAGTTATTCTGA 1380 0.4601 MIRLRRIRVRDLAPMEGSADIFRASPVTGASSSSSSSSSNSRRYGFLSASNIIQAPLSVLLEYSGILPSRSNHHHHQPNPDTAVPNDGEVSIRIIGSAEHDHHREEQPPPNGGGGGLVVGNDAATIPSSPSHGDGEGASRTGSGNSDAEAGGGDGVGSNGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPVLIGIAVAFTLHVVGVYWWYQNDDLMYPLVMLPPKDIPPFWHAIFVIMVNDTLVRQAAMVVKCMLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02126 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 446 IPR013083 -
Rops8g02126 459 ProSitePatterns Zinc finger RING-type signature. 413 422 IPR017907 -
Rops8g02126 459 MobiDBLite consensus disorder prediction 100 160 - -
Rops8g02126 459 ProSiteProfiles Zinc finger RING-type profile. 398 436 IPR001841 -
Rops8g02126 459 MobiDBLite consensus disorder prediction 124 146 - -
Rops8g02126 459 SUPERFAMILY RING/U-box 391 441 - -
Rops8g02126 459 Pfam Zinc finger, C3HC4 type (RING finger) 396 439 - -
Rops8g02126 459 CDD RING-HC_RNFT1-like 396 436 - -
Rops8g02126 459 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 33 459 IPR044235 GO:0061630|GO:1904294
Rops8g02126 459 SMART ring_2 398 435 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02126 Rops-Chr8 49399060 49406416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02126 17 459 C3H Transcription Factor Family AT5G01960 70.628 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02126 - K22379 gmx:100818546 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02126 8 49399060 49406416 Rops8g02126 8 49399060 49406416 ECH