Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02109 ATGAGACCCTCCACCCCACATAACATTTCTTTCTTAACAAACCGTTTCAAGAGTAACTCTACAAAGTGCAGTGCATTTTTTGATAACATCCCTAAAGACTTGTTGGAGAACACTTTTTATCTTGACCAGTTTCCTGTCTTCAGATCAGTGTTGGTGAATTTTCAAAGTGTAATTGAGGACTTATCAGACATGCAAAGGTGGGGGTTTGTGCTTTTTGCTGGGATGACATGGCTTTACTTAACTGCAAGACCAGGTGTTCTTGTTGGTGCCATTGATGCATTTCTTTTGGCTCCAATGCAAATGGTTTTGGACAGTTTATCTGGAAGGAGAAATCTGAAGAGGAGTGATTTTCTGATTGGAGATAAGCTAGGAGAAGGGTCATTTGGTGTTGTTTATTCAGGTGTGTTGGTTCCAAAGAATGTAGATGTAGAAGAGAGGATGCAGATGAGTGGAAGAGGAAAGGTGACAAAGTTGGATGCCAAATCTAAGGATAAAGTCGTCCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCTGAAGAATTTGGTGATTTTGAGGAGTGGTTCAATTATAGACTCTCTAGAGCAGCTCCTGATACATGTGCCAAGTTCCTTGGAAGTTTTGTGGCCGATAAAAGCAATTCACAGTTCACTAAAGGTGGAAAATGGCTTGTCTGGAAGTTTGAGGGAGGTCGCTCTCTTGCTGATTACATGGCAGATCGCAACTTCCCTTCAAACTTAGAGTTTGTCATGTTTAAACGTGTCTTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTGATCATCAAGCAAATAATGCGGCAGATCATTACATCTCTTAAGAAAATTCATGACACTGGCATAGTTCACAGGGATGTAAAGCCTGCCAACTTGGTGGTTACCAAACGGGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGCGGATTGGAAAGAATTATGCTCCCAATTACACCCCTTTGGATCCTAACTACTGTCCCCCTGAACTATATGTGCTACCAGAAGAAACACAGAGTCTTCCACCAGAGCCAATTGCAGCTTTACTTTCACCAATCTTGTGGCAGTTAAACAATCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCTTGCAAATGGCAATACCAACCTTAAGGTCTCCAGCTGCTTTGAAGAATTTCAATTTGGAAATAAAAACATGTGGATATGATTTGAACAAATGGAGGAACTCTACTCGGATGAGATCTGACTTCCAATTTCTTGATAGTGACTCTGGTAAAGGGTGGGACTTAGCAACAAAGCTTATCTCCAAGAGAGGCTCCAAAAGAAGAGGACGTTTATCTGCTGCTGCTGCATTGAGGCATCCTTATTTCCTTCTAGGCGGTGATCAGGCAGCTACAGTGCTTTCAAAATTAAGCCTAAGCACAAAGTGA 1440 0.4153 MRPSTPHNISFLTNRFKSNSTKCSAFFDNIPKDLLENTFYLDQFPVFRSVLVNFQSVIEDLSDMQRWGFVLFAGMTWLYLTARPGVLVGAIDAFLLAPMQMVLDSLSGRRNLKRSDFLIGDKLGEGSFGVVYSGVLVPKNVDVEERMQMSGRGKVTKLDAKSKDKVVLKKVKVGIEGAEEFGDFEEWFNYRLSRAAPDTCAKFLGSFVADKSNSQFTKGGKWLVWKFEGGRSLADYMADRNFPSNLEFVMFKRVLQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYAPNYTPLDPNYCPPELYVLPEETQSLPPEPIAALLSPILWQLNNPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLEIKTCGYDLNKWRNSTRMRSDFQFLDSDSGKGWDLATKLISKRGSKRRGRLSAAAALRHPYFLLGGDQAATVLSKLSLSTK* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02109 479 SUPERFAMILY Protein kinase-like (PK-like) 113 461 IPR011009 -
Rops8g02109 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Rops8g02109 479 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 27 479 - -
Rops8g02109 479 Gene3D Phosphorylase Kinase; domain 1 105 227 - -
Rops8g02109 479 ProSiteProfiles Protein kinase domain profile. 117 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02109 479 Pfam Protein kinase domain 264 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02109 479 SMART serkin_6 117 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02109 479 Gene3D Transferase(Phosphotransferase) domain 1 253 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02109 Rops-Chr8 49176559 49181065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02109 117 316 MAP Kinase Kinase Kinase AT3G13530 25.616 1.14e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Rops8g02109 Pkinase 6.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02109 - - gmx:100795624 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02109 8 49176559 49181065 Rops8g02109 8 49176559 49181065 ECH