Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02108 ATGGTATCCTCTCAGTTTTCTGGTTTTACTACGGCTGGCATACGCAAACCATTACAGACTCAGTTACTCTTTCCTGCAAGCATTCCTGAAACTGTAAACACAGATCATGTTGAGCTAGATTTCTCTGATGTATTTGGTCCACTTACAATTGAAGTGAATAACATTGATTCCGCTACTGCCGAGCCTGTAGAAGAATCGAACGAGCTTGTTTATGATGACCCAGCAGTCATTTATACCCGCTCTCATTCTCTGGTTGGCCCTTCTGCTTGTGTTAGTCAATCACTTAAGCTTAATAAACTCACCATACACGAGACGGAGGATTCATTGGAACTAGAGGAGCATGTCACTGGAGAGACCATTGAAGACATCAAAGAGTCTTCTTTTGACAATGTTACCATTGAGGAATCTTTGAAAGATGAAGACGGGAATCTCATGAAGATCCAGGGAGTTAGCATTGACGATTTTGAAATCTTGAAGGTTGTGGGGCAGGGTGCATTTGCAAAAGTATATCAGGTGAGGAAAAAGGGCACTTCAGATATATATGCTATGAAGGTTATGCGGAAGGACAAAATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGAGGGATATTTTGACAAAGATAGAACACTCATTTATTGTACAACTCAGATACTCTTTTCAGACAAAATACAGATTGTATCTTGTGCTGGATTTCGTAAATGGGGGCCATCTCTTCTTTCAGCTTTATCACCAGGGCCTTTTCAGAGAGGATCTAGCACGCATATACGCAGCTGAGATTGTTTCTGCAGTTTCCCATCTCCATTCGAATGGAATAATGCACAGGGATCTAAAACCGGAAAATATCCTACTGGATGCTGATGGCCATGTTATGCTGACTGATTTTGGATTAGCAAAACAATTTGAAGAAAGTACAAGATCTAATTCGATGTGTGGTACATTAGAGTACATGGCACCTGAAATTATTCTTGGCAAGGGCCATGATAAGGCTGCTGATTGGTGGAGTGTAGGCATCTTACTGTTCGAGATGCTTACTGGAAAGCCGCCCTTCTGTGGTGGGAACCGTGAGAAAATTCAGCAGAAGATAGTTAAAGACAAGGTTAAGCTGCCAGTATTTTTGTCAAGCGAAGCCCATTCACTGTTGAAAGGGCTGCTACAGAAGGAGGCAAGTAAGCGCTTAGGTTGTGGACCTAAGGGGATTGGGGAAATCAAAGGCCACAAGTGGTTTAAACCAATTAATTGGAAAAAGTTGGATGCACGTGAAATCCTACCAAGCTTTAGGCCAGAAGTAGCTGGGCAGCACTGTGTTGCCAACTTTGAGAAGCGCTGGACTGATATGCCTGTTGTGGACTCACCAGCTGCCAGTCCAAATGGTGGAAACCCTTTCAAGGGCTTCTCTTATGTGAGGCCTGCATCCTCTTTTCTTCAAAGGAATAGCCCTGCTTGCTAA 1455 0.4296 MVSSQFSGFTTAGIRKPLQTQLLFPASIPETVNTDHVELDFSDVFGPLTIEVNNIDSATAEPVEESNELVYDDPAVIYTRSHSLVGPSACVSQSLKLNKLTIHETEDSLELEEHVTGETIEDIKESSFDNVTIEESLKDEDGNLMKIQGVSIDDFEILKVVGQGAFAKVYQVRKKGTSDIYAMKVMRKDKIMEKNHAEYMKAERDILTKIEHSFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDADGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGILLFEMLTGKPPFCGGNREKIQQKIVKDKVKLPVFLSSEAHSLLKGLLQKEASKRLGCGPKGIGEIKGHKWFKPINWKKLDAREILPSFRPEVAGQHCVANFEKRWTDMPVVDSPAASPNGGNPFKGFSYVRPASSFLQRNSPAC* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02108 484 Pfam Protein kinase C terminal domain 432 469 IPR017892 GO:0004674|GO:0005524|GO:0006468
Rops8g02108 484 Gene3D Phosphorylase Kinase; domain 1 152 452 - -
Rops8g02108 484 FunFam Non-specific serine/threonine protein kinase 152 258 - -
Rops8g02108 484 FunFam Non-specific serine/threonine protein kinase 235 430 - -
Rops8g02108 484 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 479 IPR000961 GO:0004674|GO:0005524|GO:0006468
Rops8g02108 484 SMART serkin_6 155 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02108 484 SUPERFAMILY Protein kinase-like (PK-like) 152 471 IPR011009 -
Rops8g02108 484 SMART pkinase_C_6 412 471 IPR000961 GO:0004674|GO:0005524|GO:0006468
Rops8g02108 484 PANTHER RIBOSOMAL PROTEIN S6 KINASE 121 475 - -
Rops8g02108 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Rops8g02108 484 CDD STKc_AGC 161 411 IPR045270 GO:0004674|GO:0005524
Rops8g02108 484 ProSitePatterns Protein kinases ATP-binding region signature. 161 184 IPR017441 GO:0005524
Rops8g02108 484 ProSiteProfiles Protein kinase domain profile. 155 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02108 484 Gene3D Transferase(Phosphotransferase) domain 1 235 430 - -
Rops8g02108 484 Pfam Protein kinase domain 155 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02108 Rops-Chr8 49171051 49175594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02108 1 481 AGC Kinase Gene Family AT3G08720 69.008 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Rops8g02108 Pkinase 4.6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02108 K04688 - gmx:100805922 862.062