Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02104 ATGAGTTGTGATCAACCACTCCTTCGAGAACCAGATCTTTCTCCTTCTCCACTGATTCACCACCGTCGTCATCGGAAATCAAGATCCGGTAGCTGCGATAGGGACTTCCCTTTGGAATGCCCCACGCAGGAGAACAACAGGGAACGACGTCGTTTATCAATGGAATTGCACGATGCTGCTGCCACCACCAACAACAACAACCGCGCCGTGCCCTTTGAAATTTCATCATCCGCATCCACACCACCACCTTCTTCATCTCAGCGGATTCGTCACAAAAGTGTTCAATTTGATGATGAAGCCTTACACGAGGAACGTTCTAGATTGATCTACATCGATGATCCGAAGAGAACCAATGATAAATATGAGTTCACAGGGAACCAGATCACGACTAGTAAATACACCCTTTTAACATTTTTGCCCAAGAATTTATTCATTCAGTTTCACCGTGTTGCTTATTTGTATTTTCTTGCCATTGCTGCATTGAATCAGCTTCCCCCTTTAGCTGTTTTTGGGAGAACAGTGTCCCTTTTCCCTTTGTTGTTTGTGCTTTGTGTCACTGCCATTAAAGATGGTTATGAGGATTGGAGGAGACATAGGTCGGATCGAAATGAGAATAATAGAGAGTCCCTTGTGCTTCAATTCGGTGATTTTCGATCTAAGAAGTGGAAGAATATTCAAGCTGGTGAGGTTGTTAAGGTTTTTGCTGATGAGACGATTCCTGCTGATATGGTGTTGTTGGGGACCAGTGATCAAAGTGGGTTGGCTTATATTCAAACGATGAACTTGGATGGGGAATCGAATTTGAAGACGAGGTATGCTAGGCAGGAAACAGCTTCTGCTGTTTCATCAGAAGCTTGTAATGTTTCTGGGGTTATTAGATGTGAGCAACCCAATAGGAATATTTATGAGTTCACTGCCAATGTGGAGTTCAATGGACTTAAGATTTCACTTAGCCAGTCAAACATTGTGCTACGTGGTTGCCAGTTGAAGAACACGGATTGGATAATTGGGGTTGTAGTTTATGCTGGACAAGAAACAAAGGCCATGTTGAATAGTGCACCTTCTCCTTCCAAGAGAAGCAGATTGGAAAGTTACATGAATAGGGAAACCCTTTGGTTGTCAATTTTTCTTTTTATCATGTGTTTGGTTGTGGCACTTGGGATGTGTCTTTGGCTGATACGCCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAAGATACTTCAACAATGGGCCGGATAAGGGAAAGAAGTACAAGTATTATGGGATACCAATGGAAGCCTTTTTCTCCTTTTTGAGTTCTGTTATAGTGTTTCAGATAATGATACCAATATCTCTTTATATCACGATGGAGTTGGTTCGATTGGGTCAGTCGTACTTCATGATTGAAGACAGGGATATGTATGATGCTAACTCTGGATCAAGGTTTCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGGTATATATTTTCAGACAAGACTGGAACACTGACAGAAAACAAGATGGAATTCCAGAGGGCAAGTGTGCATGGGAAGAATTACGGGAGCTCCTTGCTTACGGCTGATGATAATACAGCAGCAGCAGCTGTCATTCCTAAACGGAGATGGAAGCTGAAATCTGAAATTGCAGTTGATTCCGAACTGTCGACCATGTTGTGGAAAGACTCAAATAGAGATGAAAGAATTGCTGCTCATGAGTTTTTTCTTACATTGGCTGCTTGTAATACTGTGATCCCTATACTTAGTGATGGTGGATTTTCTGGTTCTGTAACAAGTGGATCAAATGAAGATACAGAATGCATTGATTACCAGGGAGAATCTCCTGATGAACAAGCTCTAGTTTCTGCAGCCTCTGCATATGGATATACTCTTTTTGAGCGAACATCTGGGCATATTGTTATTGACGTCAATGGTGAGAAACTCAGATTGGACGTATTGGGCCTGCATGAGTTCGATAGTGTGAGAAAGAGAATGTCTGTTGTTATTCGGTTTCCTGACAATGTTGTGAAGGTGTTAGTCAAAGGTGCTGATACTTCAATGTTTAGCATTTTGGCTGATGGAAGTGAGAGCAACATTAGCATATGGCATACAACTCAGAGCCATCTGAATGAATATTCTTCACAAGGTTTGCGGACTCTTGTTGTTGCCTCCAGGGATCTTACTGATGCTGAGCTTGAGGAGTGGCAAAACAGGTATGAAGAGGCAAGCACTTCATTGACTGACAGAGCTACTAAACTACGTCAAACAGCAGCGCTTATAGAATGCAATTTAAAGCTACTTGGAGCAACTGGAATTGAGGACAAGCTGCAAGAGGGCGTGCCAGAAGCCATTGAGTCCCTGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAAGAGACGGCAATTTCAATTGGTCTTTCCTGCAAACTTCTCACTGCAGATATGCAGCAGATTATTATAAATGGAACTTCAGAGGTTGAATGCCGAAATCTTTTGAGTGATGCTAAAGCCAAATATTGTGTGCGATCTTCAAGTAGAAGGCATCAGAATCTGAAGCACAAAACCGATGACGGACATGGTGATCTTGATATTCCCAATGGTTCAAAGTCATTGAGCTTGCCCAAGTGGAATCCAGGAAAGGAAGAAGGAACTGATACTCCATTGGCACTCATAATTGATGGAAACAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTCGACCTTGCAACTTCCTGTAGGGTTGTGCTGTGTTGTCGTGTTGCACCCTTGCAGAAGGCAGGAATTGTTGATCTGATAAAAAGCCGCACTGATGATATGACACTGGCCATAGGTGATGGGGCCAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGACGCCAAGCTGTGATGGCATCAGATTTTGCCATGGGACAATTTCAGTTCTTGAAAAGATTGCTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTCGGTTATTTAGTTCTCTACAACTTCTACCGCAATGCTGTCTTTGTATTGATGTTATTCTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCATTGACAGATTGGAGTAGTGTATTCTATTCCGTGATATACACATCTTTACCTACTATTATTGTTGGTATTCTGGACAAAGACTTGAGTCATAGGACACTCTTGCAGTATCCAAAACTGTATTGTGCTGGTCACAGGCAAGAAGCTTACAATATGCAGTTATTTTGGATCACAATGATTGACACAGTATGGCAGAGCCTTGTTCTCTTCTATGCACCTTTGTTCACCTATAAGGACAGTTCAATTGATATATGGAGCATGGGCAGTTTGTGGACAATTACAGTTGTTATCCTTGTAAATGTACACCTGGCTATGGACATCAACCGTTGGGTATTAATTACTCATCTCGCTATCTGGGGATCGATAATCATTACATATGGTTGCATGGTGGTATTGGATTCTATACCTGTATTTCCCAATTACTGGACTATTTATCATCTGGCAAGGTCCCCTACTTATTGGATAACAATTTTGCTTATAATAATCGTGGCATTGCTCCCTCGCTTTATTTGCAAAGTTGTTTGTCAAATATTTTGGCCTTCAGATATTCAGATAGCTAGAGAAGCCGAGTTAATGAGAAGACGACATGATTGTGTGCAGTCCAGGCAGCAATTTTCCAGTTAA 3735 0.4182 MSCDQPLLREPDLSPSPLIHHRRHRKSRSGSCDRDFPLECPTQENNRERRRLSMELHDAAATTNNNNRAVPFEISSSASTPPPSSSQRIRHKSVQFDDEALHEERSRLIYIDDPKRTNDKYEFTGNQITTSKYTLLTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQFGDFRSKKWKNIQAGEVVKVFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYARQETASAVSSEACNVSGVIRCEQPNRNIYEFTANVEFNGLKISLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAPSPSKRSRLESYMNRETLWLSIFLFIMCLVVALGMCLWLIRHKNQLDTLPYYRKRYFNNGPDKGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDRDMYDANSGSRFQCRSLNINEDLGQIRYIFSDKTGTLTENKMEFQRASVHGKNYGSSLLTADDNTAAAAVIPKRRWKLKSEIAVDSELSTMLWKDSNRDERIAAHEFFLTLAACNTVIPILSDGGFSGSVTSGSNEDTECIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVLVKGADTSMFSILADGSESNISIWHTTQSHLNEYSSQGLRTLVVASRDLTDAELEEWQNRYEEASTSLTDRATKLRQTAALIECNLKLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLTADMQQIIINGTSEVECRNLLSDAKAKYCVRSSSRRHQNLKHKTDDGHGDLDIPNGSKSLSLPKWNPGKEEGTDTPLALIIDGNSLVYILEKELESELFDLATSCRVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKRLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSLPTIIVGILDKDLSHRTLLQYPKLYCAGHRQEAYNMQLFWITMIDTVWQSLVLFYAPLFTYKDSSIDIWSMGSLWTITVVILVNVHLAMDINRWVLITHLAIWGSIIITYGCMVVLDSIPVFPNYWTIYHLARSPTYWITILLIIIVALLPRFICKVVCQIFWPSDIQIAREAELMRRRHDCVQSRQQFSS* 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02104 1244 MobiDBLite consensus disorder prediction 62 91 - -
Rops8g02104 1244 MobiDBLite consensus disorder prediction 1 49 - -
Rops8g02104 1244 NCBIfam phospholipid-translocating P-type ATPase 123 1225 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Rops8g02104 1244 FunFam Phospholipid-transporting ATPase IC 493 505 - -
Rops8g02104 1244 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 97 1228 - -
Rops8g02104 1244 Pfam Cation transport ATPase (P-type) 601 687 - -
Rops8g02104 1244 SUPERFAMILY HAD-like 483 995 IPR036412 -
Rops8g02104 1244 Coils Coil 724 744 - -
Rops8g02104 1244 Gene3D - 182 351 - -
Rops8g02104 1244 Gene3D - 493 505 IPR023214 -
Rops8g02104 1244 MobiDBLite consensus disorder prediction 62 90 - -
Rops8g02104 1244 SFLD p-type atpase 480 1001 IPR044492 -
Rops8g02104 1244 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 779 IPR023299 GO:0000166
Rops8g02104 1244 Gene3D - 506 523 IPR023299 GO:0000166
Rops8g02104 1244 SUPERFAMILY Calcium ATPase, transmembrane domain M 123 1217 IPR023298 -
Rops8g02104 1244 SFLD Haloacid Dehalogenase 480 1001 - -
Rops8g02104 1244 NCBIfam HAD-IC family P-type ATPase 920 1036 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g02104 1244 NCBIfam HAD-IC family P-type ATPase 429 520 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g02104 1244 NCBIfam HAD-IC family P-type ATPase 761 814 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g02104 1244 Pfam Phospholipid-translocating P-type ATPase C-terminal 978 1218 IPR032630 -
Rops8g02104 1244 MobiDBLite consensus disorder prediction 853 884 - -
Rops8g02104 1244 Gene3D - 762 990 IPR023214 -
Rops8g02104 1244 SUPERFAMILY Calcium ATPase, transduction domain A 207 348 IPR008250 -
Rops8g02104 1244 Gene3D - 606 744 IPR023299 GO:0000166
Rops8g02104 1244 Gene3D - 479 492 - -
Rops8g02104 1244 FunFam Phospholipid-transporting ATPase 608 743 - -
Rops8g02104 1244 Pfam E1-E2 ATPase 209 454 - -
Rops8g02104 1244 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Rops8g02104 1244 Pfam Phospholipid-translocating ATPase N-terminal 109 174 IPR032631 -
Rops8g02104 1244 CDD P-type_ATPase_APLT_Dnf-like 125 1110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02104 Rops-Chr8 49135116 49144308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02104 85 1227 Primary Pumps ATPases AT5G04930 57.081 0.0 1328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02104 K14802 - gmx:100812459 2109.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02104 8 49135116 49144308 Rops8g02104 8 49135116 49144308 ECH
Rops8g02104 8 49135116 49144308 Rops4g00761 4 20658046 20665706 PCT