Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02100 ATGATGCAATTCAGCATATGTATGCTGTTTCTGATTCTTTTTGGTCCAGTTTTGCTCCCAGTGCTCTCTGTGGATCCTGGTTTCAATGATGATGTGTTGGGGTTGATTGTGTTTAAGGCTGGTTTACAAGACCCAAAGCATAAACTTTCTTCTTGGAATGAAGATGATTATAGTCCTTGCAACTGGGAAGGGGTCAAATGTGATCCTTCATCCAATAGGGTCACTGCTCTTGTCCTTGATGGGTTCTCTCTTTCTGGGCATGTTGATAGAGGCCTATTGAGATTGCAGCTCCTTCAAATTCTCTCACTTTCTGGGAATAACTTCACAGGGTCCATAAACCCTGATCTTCCACGCCTTGGGAGTTTGCAAGTTGTTGACTTGAGTGATAACAACCTTTCTGGGACAATCCCTGAAGGGTTTTTCCAACAATGTGGTTCTTTGAGAACAGTTTCCTTTGCCAAGAACAACCTTACAGGTAAGATTCCTGATTCTTTGAGCTCATGTTCCACATTGGCAACTGTTAACTTCTCCTCTAATCAACTTTATGGGGAATTGCCATCTGGGGTGTGGTATTTGAGGGGACTACAGTCACTTGATCTGTCAAATAACTTGCTGGAAGGAGAGATTCCTGAAGGAATTCAGAATCTGTATGATATGAGGGAGTTGAGTCTACAGAATAATCACTTTACTGGCAAGCTTCCTGGGGATATTGGAGGCTGCATAGTTTTGAAATCACTTGACTTGAGTGATAATTTTCTCTCTGGGGAACTTCCTCAGTCATTGCAAAGACTCACTTCATGCACATCACTCAGTTTGCATGGAAATTCATTCACAGGAGGCATTCCACACTGGATTGGAGAGTTAAAAGATCTAAAGATATTGGATCTTTCTGCAAATAGATTTTCTGGTTGGATTCCAAAATCTTTAGGAAATCTAGACTCTTTGCATAGATTAAATATATCCAGGAATCAGTTCACAGGAAACTTGCCTGATTCAATGTTAAACTGCACTAAGCTTTTGGCTCTTGATATCAGCCACAATCAGTTGGCAGGCCATCTTCCTTCATGGATTTTTAGGATGGGTTTACAAAGTATCTCTCTTTCTGGGAATAGCTTTGGTAAGGGCAACAATTATCCTTCACTCAAGTCCACACCTGCATCTTATCATGGTCTTGAGGTTTTGGATTTGTCATCCAATGCATTTTCTGGTGAACTTCCATCTGGCATTGGGGCTCTTAGTAGCCTTCAAGTCCTCAATATGTCAACCAACAATATCTCTGGTTATATTCCTGTTGGTATAGGAGAACTTAAATCTTTATACATTATCGACTTAAGTGACAACAAGCTCAATGGAAGCATCCCTCCTGAAATAGAAGGGGCAATTTCACTCAGTGAACTGAGGCTACAAAAGAACTTCCTTGGTGGAAAAATTCCAGTCCAAATTGAGAAGTGTTCATCTCTAACATCTTTGATTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTGCAGCCATTGCAAACCTATCCAATCTTCAGTATGTTGATTTATCACGGAATGAACTCTCTGGAAGTTTACCCAAGGAGCTGACAAATCTTTCCCATCTTCTATCATTTAATGTATCCTACAACCAACTTCAAGGTGAACTACCAGTTGGTGGCTTCTTCAACACCATCCCCTCCTCATCTGTCTCTGGTAACACATTGTTGTGTGGTTCTGTTGTCAACCACTCCTGCCCATCTGTTCATCCCAAACCTATTGTCTTAAATCCCAATTCTTCTAGTTCCAACTCCAGCATTTCCTCACAAAATCATCGACATAAGATCATACTCAGTATCTCAGCTCTCATTGCTATTGGAGCAGCTGCTTTTATTGCCATTGGTGTGGTGGCAATTACTGTCCTAAATATCCGTGTGCGGTCTTCAATGGAACGTGCTCCTGCTACATTTGCATTCTCTGGTGGTGAGGACTATAGTTGTTCACCGGCGAATGATCCAAACTATGGCAAGCTTGTCATGTTTTCTGGTGATGCAGACTTTGCTGATGGAGCTCATAATCTTCTCAATAAAGACAGTGAAATAGGTCGTGGTGGATTTGGAGTTGTTTATCGCACTTTCCTTCGAGACGGGCATGCTGTTGCAATCAAGAAGCTCACAGTCTCCAGTTTGATCAAGTCCCAAGAAGACTTTGAGAGGGAAGTGAAGAAGCTTGGGAAGATCAGGCACCAGAATCTTGTAGCACTTGAAGGTTATTATTGGACTTCATCCTTGCAGCTCCTCATTTATGAGTACCTATCCAGAGGGAGTTTGCATAAGCTTCTACATGATGATAATAGCAAAGATGTCTTCTCTTGGAGACAAAGGTTCAAGATTATTCTTGGCATGGCAAAAGGGTTGGCTCATTTGCACCAAGTGAACACAATCCACTACAATCTTAAATCAACCAATGTTCTGATTGATTGTTCTGGTGAGCCAAAAATAGGAGATTTTGGCTTGGTGAAACTATTGCCAGTGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCTCCTGAGTTTGCTTGCCGCACAGTTAAGATAACTGAGAAATGTGATGTATATGGTTTTGGGATCCTGGTTCTTGAGGTGGTGACAGGAAAAAGACCTGTGGAATATATGGAGGATGATGTGGTAGTTCTCTGTGACTTGGTGAGGGGTGCATTGGAAGAAGGCAAAGTGGAGCAATGTATTGATGGAAGGCTCATGGGAAATTTTGCTGCTGAGGAAGCAATTCCTGTGATAAAATTGGGGTTGATTTGTGCATCACAAGTGCCATCAAACCGTCCAGATATGGCTGAGGTAATCAACATATTAGAGTTAATCCAGTGCCCTTCAGAAGGACAAGAGGAATTAGAATGA 2913 0.4174 MMQFSICMLFLILFGPVLLPVLSVDPGFNDDVLGLIVFKAGLQDPKHKLSSWNEDDYSPCNWEGVKCDPSSNRVTALVLDGFSLSGHVDRGLLRLQLLQILSLSGNNFTGSINPDLPRLGSLQVVDLSDNNLSGTIPEGFFQQCGSLRTVSFAKNNLTGKIPDSLSSCSTLATVNFSSNQLYGELPSGVWYLRGLQSLDLSNNLLEGEIPEGIQNLYDMRELSLQNNHFTGKLPGDIGGCIVLKSLDLSDNFLSGELPQSLQRLTSCTSLSLHGNSFTGGIPHWIGELKDLKILDLSANRFSGWIPKSLGNLDSLHRLNISRNQFTGNLPDSMLNCTKLLALDISHNQLAGHLPSWIFRMGLQSISLSGNSFGKGNNYPSLKSTPASYHGLEVLDLSSNAFSGELPSGIGALSSLQVLNMSTNNISGYIPVGIGELKSLYIIDLSDNKLNGSIPPEIEGAISLSELRLQKNFLGGKIPVQIEKCSSLTSLILSHNKLTGSIPAAIANLSNLQYVDLSRNELSGSLPKELTNLSHLLSFNVSYNQLQGELPVGGFFNTIPSSSVSGNTLLCGSVVNHSCPSVHPKPIVLNPNSSSSNSSISSQNHRHKIILSISALIAIGAAAFIAIGVVAITVLNIRVRSSMERAPATFAFSGGEDYSCSPANDPNYGKLVMFSGDADFADGAHNLLNKDSEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEDFEREVKKLGKIRHQNLVALEGYYWTSSLQLLIYEYLSRGSLHKLLHDDNSKDVFSWRQRFKIILGMAKGLAHLHQVNTIHYNLKSTNVLIDCSGEPKIGDFGLVKLLPVLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILVLEVVTGKRPVEYMEDDVVVLCDLVRGALEEGKVEQCIDGRLMGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVINILELIQCPSEGQEELE* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02100 970 SUPERFAMILY Protein kinase-like (PK-like) 688 960 IPR011009 -
Rops8g02100 970 SMART LRR_sd22_2 192 215 - -
Rops8g02100 970 SMART LRR_sd22_2 508 534 - -
Rops8g02100 970 SMART LRR_sd22_2 288 314 - -
Rops8g02100 970 SMART LRR_sd22_2 436 459 - -
Rops8g02100 970 Gene3D Ribonuclease Inhibitor 307 584 IPR032675 -
Rops8g02100 970 Gene3D Ribonuclease Inhibitor 29 306 IPR032675 -
Rops8g02100 970 CDD STKc_IRAK 693 959 - -
Rops8g02100 970 SUPERFAMILY L domain-like 288 563 - -
Rops8g02100 970 Gene3D Phosphorylase Kinase; domain 1 676 763 - -
Rops8g02100 970 Pfam Leucine Rich Repeat 243 264 IPR001611 GO:0005515
Rops8g02100 970 Pfam Leucine Rich Repeat 195 216 IPR001611 GO:0005515
Rops8g02100 970 Gene3D Transferase(Phosphotransferase) domain 1 764 968 - -
Rops8g02100 970 ProSiteProfiles Protein kinase domain profile. 687 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02100 970 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 681 763 - -
Rops8g02100 970 Pfam Protein kinase domain 688 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02100 970 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 308 582 - -
Rops8g02100 970 PANTHER LEUCINE RICH REPEAT KINASE 2 213 958 - -
Rops8g02100 970 SUPERFAMILY L domain-like 46 372 - -
Rops8g02100 970 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Rops8g02100 970 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 764 965 - -
Rops8g02100 970 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Rops8g02100 970 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 29 307 - -
Rops8g02100 970 SMART LRR_typ_2 532 556 IPR003591 -
Rops8g02100 970 SMART LRR_typ_2 337 360 IPR003591 -
Rops8g02100 970 SMART LRR_typ_2 192 215 IPR003591 -
Rops8g02100 970 SMART LRR_typ_2 508 531 IPR003591 -
Rops8g02100 970 SMART LRR_typ_2 216 240 IPR003591 -
Rops8g02100 970 SMART LRR_typ_2 412 436 IPR003591 -
Rops8g02100 970 SMART LRR_typ_2 312 336 IPR003591 -
Rops8g02100 970 SMART LRR_typ_2 119 143 IPR003591 -
Rops8g02100 970 SMART LRR_typ_2 288 311 IPR003591 -
Rops8g02100 970 SMART LRR_typ_2 484 507 IPR003591 -
Rops8g02100 970 Pfam Leucine rich repeat 486 545 IPR001611 GO:0005515
Rops8g02100 970 Pfam Leucine rich repeat 268 325 IPR001611 GO:0005515
Rops8g02100 970 Pfam Leucine rich repeat 390 449 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02100 Rops-Chr8 49065835 49069894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02100 1 967 Receptor kinase-like Gene Family AT5G01890 61.910 0.0 1156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Rops8g02100 Pkinase 1.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02100 - - gmx:100790365 1689.86