Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02094 ATGCAGCGCCGTCTTCTTGACACTGAACTAAGCATGCCACCATCTTATGGGAACAAAACCCATGATTCGTTCATCAACGAAGCAAACTTCGACACCAACATGGTGATCATATTAGCAGCACTTTTGAGCGCATTGATATGTGCCTTGGGGTTGAACTCCATAGCTCGCTGTGCTTTTCGTTGTAGCAGAAGATTCTCTCAAGAGACACCGGAACAAACGGCGGCGAGGCTAGCCGCCACGGGGCTTAAGAAGCGTGACCTGAGCCAGATTCCGGTGACGGTGTACGGATCCGGCGAGAATATTCCGGCGACGGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAAGGGGACAAGATTCGAATGTTGCCAAAGTGCAATCACGGGTTTCATGTGAGGTGCATAGACACGTGGTTGGTGTCACATTCTTCTTGCCCCAATTGTCGCCATTCACTGCTAGAGAAACCTACCGTTTCTTCTTCTTCTTCAACTTCTTCTGGAGTCGCCGGAGAAAGGTCGCCGGAAAATGGCTCCGGCCAGCAAGGCAACGTCGCCGTGATCATAGAGCAGGCAAGTTGA 576 0.5174 MQRRLLDTELSMPPSYGNKTHDSFINEANFDTNMVIILAALLSALICALGLNSIARCAFRCSRRFSQETPEQTAARLAATGLKKRDLSQIPVTVYGSGENIPATECPICLGEFEKGDKIRMLPKCNHGFHVRCIDTWLVSHSSCPNCRHSLLEKPTVSSSSSTSSGVAGERSPENGSGQQGNVAVIIEQAS* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02094 191 SMART ring_2 106 147 IPR001841 -
Rops8g02094 191 PANTHER RING-H2 FINGER PROTEIN ATL78 11 164 IPR044602 GO:0016567|GO:0016740
Rops8g02094 191 CDD RING-H2_EL5-like 105 148 - -
Rops8g02094 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 153 IPR013083 -
Rops8g02094 191 MobiDBLite consensus disorder prediction 155 191 - -
Rops8g02094 191 Pfam Ring finger domain 105 148 IPR001841 -
Rops8g02094 191 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Rops8g02094 191 SUPERFAMILY RING/U-box 89 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02094 Rops-Chr8 48984642 48985991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02094 1 156 C3H Transcription Factor Family AT3G10910 58.434 3.10e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02094 K19040 - tcc:18602224 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02094 8 48984642 48985991 Rops8g02094 8 48984642 48985991 ECH