Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02088 ATGAGTTTCAGAGACAAGAACGTTGGAGGAGAAGAGAGGGAATATGAAGAATCAGTGTTGGGGAGCACTGAATCCAAATCAGTGAGGCAAAATGGGTCTTTAACAATTGATGAGAATCTTCTGGTTGACCCCAAATTGCTCTTTATTGGGAACAAGATTGGTGAGGGAGCTCATGGCAAAGTTTATGAAGGAAGGTATAGAGATAGAATTGTTGCAATCAAAGTTCTGCATCGTGGGAGCACTTCAGAAGAAAGAGCTGCCCTTGAAAATCGATTTGCTCGGGAAGTTATTATGATGTCTCGTGTCCACCATGAGAATCTTGTTAAGTTTATTGGAGCGTGTAAGGATCCTCTTATGGTGATAGTTACAGAGCTATTACCTGGAATGTCACTGCGGAAATATTTGATCAGTATCCGTCCTAAACTATTAGACATTCATGTGGCTATAAACTTTGCCCTTGACATTGCTCGAGCCATGGATTGGCTGCATGCTAATGGAATCATACATAGAGATCTGAAACCTGATAATCTGTTGCTTACAGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCTGAAACAGGAACTTACCGTTGGATGGCACCAGAGTTGTACAGTACTGTTACGTTGCGTCAGGGTGAGAAAAAACACTACAACAACAAGGTTGATGTATATAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAACCGCATGCCTTTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCCAGCATTCCAGATGATATATCCCCTGATCTTGCTTTTGTCATACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCAAGTTTTAGTCAAATCATCCGCATGCTCAATGCATTTCTCTTCACACTCTCACCACCATCCCCTCCTTTGCCAGAACCTGACAATGAACCTGAGGTGGCAACAACAAGTAATGGTACAATTACCGAGTTTTCTGCCCGAAACAGAGGAAAGTTTGCTTTTCTTCGCCATTTGTTTTCTTCAAAGAGGACCAAAAACTAA 1095 0.4174 MSFRDKNVGGEEREYEESVLGSTESKSVRQNGSLTIDENLLVDPKLLFIGNKIGEGAHGKVYEGRYRDRIVAIKVLHRGSTSEERAALENRFAREVIMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLISIRPKLLDIHVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPDDISPDLAFVIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPPSPPLPEPDNEPEVATTSNGTITEFSARNRGKFAFLRHLFSSKRTKN* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02088 364 ProSitePatterns Protein kinases ATP-binding region signature. 53 74 IPR017441 GO:0005524
Rops8g02088 364 MobiDBLite consensus disorder prediction 1 20 - -
Rops8g02088 364 ProSiteProfiles Protein kinase domain profile. 47 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02088 364 PRINTS Tyrosine kinase catalytic domain signature 279 301 IPR001245 GO:0004672|GO:0006468
Rops8g02088 364 PRINTS Tyrosine kinase catalytic domain signature 161 179 IPR001245 GO:0004672|GO:0006468
Rops8g02088 364 PRINTS Tyrosine kinase catalytic domain signature 123 136 IPR001245 GO:0004672|GO:0006468
Rops8g02088 364 PRINTS Tyrosine kinase catalytic domain signature 235 257 IPR001245 GO:0004672|GO:0006468
Rops8g02088 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Rops8g02088 364 SUPERFAMILY Protein kinase-like (PK-like) 45 331 IPR011009 -
Rops8g02088 364 Gene3D Phosphorylase Kinase; domain 1 36 126 - -
Rops8g02088 364 FunFam Kinase suppressor of Ras 1 36 126 - -
Rops8g02088 364 MobiDBLite consensus disorder prediction 1 26 - -
Rops8g02088 364 Gene3D Transferase(Phosphotransferase) domain 1 130 318 - -
Rops8g02088 364 Pfam Protein tyrosine and serine/threonine kinase 49 308 IPR001245 GO:0004672|GO:0006468
Rops8g02088 364 SMART serkin_6 47 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02088 364 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 47 309 - -
Rops8g02088 364 CDD STKc_MAP3K-like 53 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02088 Rops-Chr8 48752653 48757248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02088 35 364 MAP Kinase Kinase Kinase AT5G01850 73.164 0.0 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Rops8g02088 PK_Tyr_Ser-Thr 2.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02088 - - cave:132162584 603.208