Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02082 ATGCGTGGTTCTTTAAATGAAGTTTCCTTGGAAGTTAAGATTTTCCAGCAAAGCCCGTTAGAGAAACGCTACAATACCCAAACCCAGTTTATCAATCTCAATTTTCAGTTAGTTACCATGAGAGAGCCACAGAACGACACCGTTGTGGCCGAAGAAACAAAAGCAGAAACAGAGGCGTCGCAACGCGGCGTCGTTTTGTTCGGGAAATACGAGTTGAAGAAGTTACTTGGCGTCGGTGCGTCGGCGAAGGTGTACCACGCGACGAACTTGAAAACAGGGCAGAGTGTGGCGGTTAAGGTCGTTAGCAAACGGAAGGTTCTAGAAGGAGGCTTCGCCTCCAACGTGGAACGCGAGATCTCAATCATGCGCCACCTCCACCACCCAAACATCGTCGAACTCTTCGAGGTCCTCGCCACGAAGACAAAAATTTACTTCATCGTTGAATTTGCCGCAGGCGGTGAACTCTTCTACGAGGTCTCCGGAAAGGGGCGGTTATCAGAAGACCTCGCCCGGCGATACTTCCGGCAACTAATCTCCGCCGTCCAGCACTGCCACTCTCACGGCGTTTTCCACCGTGACCTCAAACTCGATAACCTCTTGCTCGACGAGAACGGTGACCTGAAAATAATAGATTTCGGGTTAAGCGCCGTTAAGGATCAGATCCGACCCGACGGGTTGCTCCATACAGTTTGTGGGACCCCTTCCTACGTGGCACCTGAGATTCTCGCGAAAAGAGGTTACGACGGTGCCAAAGTGGACGTGTGGTCATGCGGCGTCGTTTTGTTCGCACTCACAGCAGGTTATTTACCCTTCAATGATTACAATATTACCATTTTGTACAGAAAGATTTACCGCGGTCAATTTCGGTTACCGAAGAAATGGATGTCCAATGATCTGAAGAACCTCTTATCACGTTTATTGGACACGAACCCCGAAACAAGGATAACCGTTGATGAGATCTTAAAGGACACGTGGTTCAATGCGGGTGGTTACCGGCCCGACCGGGTTTTAATCAAGGAGCATGAATTGGAAGAGACTCGAACCGGGTTCAAGTCATTGAACGCGTTTGATTTGATTTCGTTTTCGACCGGGTTGGACATGTCGGGTCTGTTTTCGGATCCAGATTCAGCGGAACGGGTCATTTCAGAGGAGGAACCGGAGAGGATTATGGAGAGAGTCGAGGAAGTGGCTAAAGGGGAAAAAATAGTGGTTAAGAGGAAGGAGAATGAAGCAAAGTTGGAAGGGCAGGATAGTAATTTTGTTGCTTTAGTGGTGGTTTACCGGTTAACGGATGAGTTGGTGATTGTTGAAATGAAGAGACGTGAAAGGGGAACTGAATGCGGCGCATCGTTTTGGAAAGATAAATTGCGACCTTTACTTCTTGAATTGGGTCGCAAACAGGAAGTGTCGGTCTCCCGGTGA 1422 0.4873 MRGSLNEVSLEVKIFQQSPLEKRYNTQTQFINLNFQLVTMREPQNDTVVAEETKAETEASQRGVVLFGKYELKKLLGVGASAKVYHATNLKTGQSVAVKVVSKRKVLEGGFASNVEREISIMRHLHHPNIVELFEVLATKTKIYFIVEFAAGGELFYEVSGKGRLSEDLARRYFRQLISAVQHCHSHGVFHRDLKLDNLLLDENGDLKIIDFGLSAVKDQIRPDGLLHTVCGTPSYVAPEILAKRGYDGAKVDVWSCGVVLFALTAGYLPFNDYNITILYRKIYRGQFRLPKKWMSNDLKNLLSRLLDTNPETRITVDEILKDTWFNAGGYRPDRVLIKEHELEETRTGFKSLNAFDLISFSTGLDMSGLFSDPDSAERVISEEEPERIMERVEEVAKGEKIVVKRKENEAKLEGQDSNFVALVVVYRLTDELVIVEMKRRERGTECGASFWKDKLRPLLLELGRKQEVSVSR* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02082 473 ProSiteProfiles Protein kinase domain profile. 70 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02082 473 SMART serkin_6 70 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02082 473 Gene3D Kinase associated domain 1, KA1 348 464 - -
Rops8g02082 473 SUPERFAMILY Protein kinase-like (PK-like) 66 337 IPR011009 -
Rops8g02082 473 Pfam Protein kinase domain 70 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02082 473 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Rops8g02082 473 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 63 441 - -
Rops8g02082 473 Coils Coil 390 410 - -
Rops8g02082 473 CDD CIPK_C 354 460 - -
Rops8g02082 473 ProSiteProfiles NAF domain profile. 348 372 IPR018451 GO:0007165
Rops8g02082 473 FunFam CAMK family protein kinase 65 359 - -
Rops8g02082 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Rops8g02082 473 Gene3D Transferase(Phosphotransferase) domain 1 150 329 - -
Rops8g02082 473 Gene3D Phosphorylase Kinase; domain 1 59 149 - -
Rops8g02082 473 FunFam Aurora kinase A 64 153 - -
Rops8g02082 473 Pfam NAF domain 351 405 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02082 Rops-Chr8 48605835 48607490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02082 65 463 CBL-interacting serine-threonine protein kinases AT2G30360 58.049 2.30e-170 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops8g02082 Pkinase 1.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02082 - K12761 gmx:100788245 607.446