Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02064 ATGCCAATTTCACAACCCCTTTTGACCCAATTTGATGCTGAATTCATATTCACATTCTTTGGCAGTGATGGAATGGCAGATCCTGCTAGTTATGGGAGTCTTGAGCGTGATATTGAGCAAGATGAAACAACACTGATTTGGATTTCTCACAAAAAGGAAAGGACACTGAAATTATCTTTAGTTTCACGTATTATCCCTGGACAAAGAACTGCTGTGTTTAGAAGATATTTGCAACCAGAAAAGGATTATCTTTCATTTTCACTTGTTTACAATAACGGGGAGCGGACACTTGATCTGATATGCAAGGACAAAGGAGAGGCAGAGGTATGGTTTGCAGGCCTTAAGACATTAATTTCTTCAGGAAGGCATAATAGGCTTGCTGGAAGTGAATTATCCGATGATGGTGTTGATTTTATTCCTACTGCTCGTCCTTTTGGTGCAGCACTAGAGTTTACTACAAGCATTGTTCGAGGTAGAGTCACAACTGATTCAGTTTCTCGCGAGTCTTCATCCCCAGATGTGGGGTTAGAGCGTGCAATTATGCAACCAAGGACAAGTATTGGAGATGGTTTTCGTGTTAGTGTGTCAAGTACACCTAGTTGTTCAAGTGGAGGATCAGGACATGATGATATTGAGTCTCTTGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGATGGAGCTTCAGCTGATGGAGTTAGCACTCACAATGTCCCTTCCACAACAGATGTGTTGATTCCTAAGCCCTTAGAATCAAGTGTTGTTCTTGATGTTCAACAAATTGCATCCGGGGTGCGACACATGGCTTTGGTTACTAGGCAAGGAGAGGTTTTCACTTGGGGAGAGGAATCTGGGGGAAGACTTGGTCATGGAGTAGATAAAGATTTTGGTCGCCCCCAAATTGTTGAGTTTCTAGCAGTTACTAATGTGGAGTATGTTGCATGTGGAGAGAATCATACATGTGCTGTATCTATATCAGATGATCTTTTCTCATGGGGTGATGGTGCATATAATGTTGGACTTCTTGGCCATGGCACTGATGTTAGCCATTGGATACCAAAGAGGGTTAGTGGTCCTTTGGAAGGACTTCAAGTTATATCTATTGCATGTGGAACATGGCATTCAGCATTGGTAACTTCTAATGGGAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAAATAGAGAGAGTGTACCATATCCAAAGGAGGTACAATTATTAAGCGGATTGAAGACTATTAAAGTAGCATGTGGAGTATGGCATACTGCAGCTATTGTAGAGGTTACTTTTCAGTCTGGTTCAAATGTTTCATCTAGGAAGCTCTTCACTTGGGGAGATGGTGATAAATATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCTACATGTGTCTCTGCACTCATTGAATATAATTTCCACCACATAGCTTGTGGACACACTATGACTGTTGCCCTCACTACATCTGGTCATGTTTTTACCATGGGAGGGAGTGAAAATGGTCAACTAGGAAATCCATTATCAGATGGAAAAGTACCTATGCTAGTACAAGACAAGTTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGAGCTCATCATGTTGCTGCCTTGACATCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACATAGATGATAGAAAATCTCCAACATTGGTTGAAGCCTTGAAAGATAGGCATGTGAAAAACATCTCTTGTGGCTCAAACTTCACATCTTGCATATGCATCCATAAATGGATCTCTGGAGTTGACCAATCAGTTTGCACTGGATGTAGACAACCATTTGGTTTTACAAGAAAAAGGCATAACTGTTATAATTGTGGATTAGTGCATTGCCATGGTTGTAGTTCAAGAAAGGTATTGAAAGCTGCATTGGCTCCAACACCAGGAAAACCTCACCGTGTGTGTGATTCTTGTTACACTAAGCTTAAAGCTGTTGAGGTAAGTGCTGCTAGCAGTTTAAATAGAAAAGTCACCACCCCACCTCGTAGTTCCATAGATGGCAGGGAAAGATTTGGCCACGGAGAAATAAGGTCTTCAAGAATGCTCTTGTCTCCTACGACAGATCCACTAAAATACCTTGAGATAATGACTACTAAGCTTGGAAACAGATATGATAGTTCTTCCTTTGTCCCAGCTTCTCAAGTTCCATCACTTTTACAATTGAAAGATATTGCATTTCCAAGTTCATCAAGTGGCATTCAAAATGCTTTGAGGGCTCCAAGTCCACCACCAACTCCACCTATCAATTCAAGATCAATATCCCCATATGCAAGAAGGCCAAGCCCACCACGATCTGGTACTCCTGGATTTTCAAGAAGTCTTATTGATAGTTTGAGGAAAACAAATGAGCTTTTAAACCAAGAAGTCTCAAAATTGCAGAACCAAAATCGAAGTTTGAAGCTGAGAAGTGACATGGAAATTCGGAAGCTTCAGAAAAAAGTTACGGAAGCTACCTCCTTGGCTGCAGTGGAATCTTCAAAACATAGAGCAGTGAAAGAATATTTTGAGTCCATGATAGATCAGTTGAAGGAAATGGCAGATAAGTTGTCACCAGAAGTTTCAGACAGTGAAAATTTCAGAACCATGCTTACTCAAGCTGAAGATTTTCTAAAAGAAAATTCAGAATGTGTAACATCTTCTGGATCATTAAACTTGGATCTTAATACACTTGCTTCAAATAGTGGCTCTTCTAAACTACAAGAACACAGAATAGAAGAAAATGATGGAACTGCAGGAGTTGACCCATCTCAAGATGGAGGAAATGTCCTTCAAGAAAGCAATGGAACATCTTTATCTAATAATGAAGCAGCAGTGCCTCCACAAAGCTCTGAAAATAATTCAAAATCACTAGAACCTTCAAGATCAGTGAGAGAAGGAGAGTCACAAGTCATTGAACAATTTGAACCTGGCGTTTATGTGACACTAATAGTAAAGCCTAATGGTACCAAAGTTTTCAAACGTGTTAGATTCAGTAAGCGAAGGTTCCATGAACAACAGGCAGAAGAATGGTGGAACAAAAACAAAGATAGGATGCTTAAGAAATATAGTTCACAAGCTACGAATCAAGAAGGTACTGGGTCCTCTAGCACCCCTCAACCTGCTGAAGAAAACATTGAAGTGATGGTGTGTATGGTGATTGCTGAAATTGAGGATAAGATGGCTGAGAGGTGTGTGGATGTGGCTGATGAGATGGTGGGTAGGGTTGAGAGGTGTGTGGATGTGGCTGATGAGAGGGTTGGTAGGGCTGAGACTGTGGATATGGATGAGGTGGTTGGTAGTGCTGAGATGGTGGATATGGCTGAGATGGTGGATATGACTGAGATGGTGGATATGGCTGGGATGGTGGGTATGGCTGGGATTGTGGATATGGCTGAGATGGTGGATATGGCTGAGATGGTGGATATGGCTGAGATGAGACTGGCCTCTCTCTTTCTTTCCCTTTCTAAGGAAATCAAATGGCATAGTGAAGAAATGACACATTTAACAATGAGGATTAAGGAGCATAAGATTCAGCTTTCAAAATTTGGCCTCAATTGCCCTTAG 3612 0.4125 MPISQPLLTQFDAEFIFTFFGSDGMADPASYGSLERDIEQDETTLIWISHKKERTLKLSLVSRIIPGQRTAVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDKGEAEVWFAGLKTLISSGRHNRLAGSELSDDGVDFIPTARPFGAALEFTTSIVRGRVTTDSVSRESSSPDVGLERAIMQPRTSIGDGFRVSVSSTPSCSSGGSGHDDIESLGDVYIWGEVWADGASADGVSTHNVPSTTDVLIPKPLESSVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGVDKDFGRPQIVEFLAVTNVEYVACGENHTCAVSISDDLFSWGDGAYNVGLLGHGTDVSHWIPKRVSGPLEGLQVISIACGTWHSALVTSNGKLFTFGDGTFGVLGHGNRESVPYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHHIACGHTMTVALTTSGHVFTMGGSENGQLGNPLSDGKVPMLVQDKLVGEFVEEISCGAHHVAALTSRSELYTWGKGANGRLGHGDIDDRKSPTLVEALKDRHVKNISCGSNFTSCICIHKWISGVDQSVCTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYTKLKAVEVSAASSLNRKVTTPPRSSIDGRERFGHGEIRSSRMLLSPTTDPLKYLEIMTTKLGNRYDSSSFVPASQVPSLLQLKDIAFPSSSSGIQNALRAPSPPPTPPINSRSISPYARRPSPPRSGTPGFSRSLIDSLRKTNELLNQEVSKLQNQNRSLKLRSDMEIRKLQKKVTEATSLAAVESSKHRAVKEYFESMIDQLKEMADKLSPEVSDSENFRTMLTQAEDFLKENSECVTSSGSLNLDLNTLASNSGSSKLQEHRIEENDGTAGVDPSQDGGNVLQESNGTSLSNNEAAVPPQSSENNSKSLEPSRSVREGESQVIEQFEPGVYVTLIVKPNGTKVFKRVRFSKRRFHEQQAEEWWNKNKDRMLKKYSSQATNQEGTGSSSTPQPAEENIEVMVCMVIAEIEDKMAERCVDVADEMVGRVERCVDVADERVGRAETVDMDEVVGSAEMVDMAEMVDMTEMVDMAGMVGMAGIVDMAEMVDMAEMVDMAEMRLASLFLSLSKEIKWHSEEMTHLTMRIKEHKIQLSKFGLNCP* 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02064 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 548 599 IPR000408 -
Rops8g02064 1203 MobiDBLite consensus disorder prediction 940 975 - -
Rops8g02064 1203 Pfam Transcription factor regulating root and shoot growth via Pin3 984 1038 IPR013591 -
Rops8g02064 1203 SUPERFAMILY FYVE/PHD zinc finger 600 667 IPR011011 -
Rops8g02064 1203 ProSiteProfiles BRX domain profile. 984 1039 IPR013591 -
Rops8g02064 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 496 547 IPR000408 -
Rops8g02064 1203 MobiDBLite consensus disorder prediction 1038 1058 - -
Rops8g02064 1203 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 368 378 IPR000408 -
Rops8g02064 1203 Gene3D - 193 439 IPR009091 -
Rops8g02064 1203 PRINTS Chromosome condensation regulator RCC1 signature 485 503 IPR000408 -
Rops8g02064 1203 PRINTS Chromosome condensation regulator RCC1 signature 327 343 IPR000408 -
Rops8g02064 1203 PRINTS Chromosome condensation regulator RCC1 signature 368 384 IPR000408 -
Rops8g02064 1203 PRINTS Chromosome condensation regulator RCC1 signature 543 564 IPR000408 -
Rops8g02064 1203 PRINTS Chromosome condensation regulator RCC1 signature 277 293 IPR000408 -
Rops8g02064 1203 PRINTS Chromosome condensation regulator RCC1 signature 384 398 IPR000408 -
Rops8g02064 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 444 495 IPR000408 -
Rops8g02064 1203 SMART fyve_4 598 667 IPR000306 GO:0046872
Rops8g02064 1203 MobiDBLite consensus disorder prediction 917 984 - -
Rops8g02064 1203 SUPERFAMILY PH domain-like 41 118 - -
Rops8g02064 1203 SUPERFAMILY RCC1/BLIP-II 215 601 IPR009091 -
Rops8g02064 1203 MobiDBLite consensus disorder prediction 754 796 - -
Rops8g02064 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 275 326 IPR000408 -
Rops8g02064 1203 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 52 856 - -
Rops8g02064 1203 FunFam PH, RCC1 and FYVE domains-containing protein 1 186 435 - -
Rops8g02064 1203 Pfam Transcription factor BRX N-terminal domain 847 882 IPR027988 -
Rops8g02064 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 327 381 IPR000408 -
Rops8g02064 1203 Gene3D - 36 125 IPR011993 -
Rops8g02064 1203 Coils Coil 798 825 - -
Rops8g02064 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 549 596 IPR000408 -
Rops8g02064 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 446 492 IPR000408 -
Rops8g02064 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 328 377 IPR000408 -
Rops8g02064 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 381 430 IPR000408 -
Rops8g02064 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 275 323 IPR000408 -
Rops8g02064 1203 Pfam Regulator of chromosome condensation (RCC1) repeat 495 544 IPR000408 -
Rops8g02064 1203 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 604 666 IPR017455 -
Rops8g02064 1203 Pfam FYVE zinc finger 600 666 IPR000306 GO:0046872
Rops8g02064 1203 CDD PH_PLC_plant-like 41 119 - -
Rops8g02064 1203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 672 IPR013083 -
Rops8g02064 1203 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 433 IPR000408 -
Rops8g02064 1203 CDD FYVE_like_SF 610 662 - -
Rops8g02064 1203 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 420 430 IPR000408 -
Rops8g02064 1203 Gene3D - 440 612 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02064 Rops-Chr8 48128713 48148162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02064 981 1046 Major Intrinsic Protein MIP AT1G31880 36.364 2.10e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02064 - - gmx:100779684 1584.7