Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02049 ATGGATGATGACCATTACTGGGGAACCTCTGAACTTAATCATCAAGATGGACTTGATGTTCCAAAATTTAAGTCTGTTCAACCTCCCTCACTACCCCTTTCTCCATCACCAATTTCCCCTTCTTCTTACTTGGCCTTTCCATCTGGTTTCAGCCCAACTGAGTTCTTGAGCTCACCTTTGTTTCTTTCTTCTCCTAATATTTTTGCATCTCCTACTACTGAGGCTTTTGCTGGCTTCAACTGGAAGAACAGTTTAGGTGAGGACCAAGTACGTGACAAGGAGGATGAGAAAAACTACTCAGACTTCTCTTTCCAAACCCAAACAAAGCCTGCATCTGTCTTTCAATCTTCCTCAAGCATGTTTCAAATGCAGGAACCACTCAAGAAACAACACATATGGAAATTTAATGAACCTGCAAAGCAAACTGATTATTCATCAACAAAATCTGAACACCCATCATCAACTCAGAGCTTTACCTCAGAAATGGCACCAAGCAAACCAGAAATACAAAGTAATTCAGGTGCTGGGTCTGGTCATTTTAACTACACTAATACATCTCAGTCTGTAAGAGAACAAAGGAGATCAGAAGATGGGTTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGAAGTGAAAATCCACGCAGTTATTACAAGTGCACACATCCGAATTGCTCAATGAAGAAGAAAGTTGAGAGGTCTTTGGTGGATGGACAAATTACTGAAATAGTATACAAGGGAAATCATAACCACGCCAAGCCCCAGTCCACTAGAAGAACAAGCTCTCAACCAATTCATCAACCTTCTTCATCCTGCACCAACTCAGGGATTTCTGATCAATCAGTGGTGACCCTAGGCAATCCACAAATGGAGCCTGTATCCATACAAGAGGATTCTTCAGCCTCTGTGGGAGAGGAAGACTTGGAGCAAACATCACAAACCAGTTATTCTGGAGGAGATGAAGTTGACCTTGGACCAGAGGCCAAAAGATGGAAGGAAGATAATGAAAACGATGGCTATTCTGCTTCAGGGAGTAGAACTGTTAAGGAACCTAGAGTTGTAGTTCAAACTACAAGCGAAATTGATATACTTGATGATGGCTATAGGTGGAGGAAATATGGGCAGAAAGTAGTTAAAGGAAACCCAAATGCAAGGAGTTATTACAAATGCACGGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGCGAGCTGCACATGATATCAAAGCTGTGATCACAACTTATGAAGGGAAACACAACCATGATGTACCTGCTGCTCGTGGTAGTGCAAGTTATAACATGAACAGAAATTCTCTGAACAGCAACACCGGTAATGTACCGGCGCCTATAAAGCCCTCGGCAGTGAGCTGTTATTCTAGCTCATCAAGTTTCACAAATTCACTTTATAATACTAGGCCTTCAATAACTGGAAATCAAGAATCATTTCCACTAGACATGTTGAAGGGTACTGGAAATTTTGGGAATCCGGCTCTTGGCAGATCAATGGGTTCATATGCCAATCATTCACAATACTCAGATGCTGCATACCCAAAGGCCAAGGATGAGAGGAATGAGGACTCATTCCTTCAGTCATTTCTATCAAAGGACTTCCAAATTTGA 1623 0.4177 MDDDHYWGTSELNHQDGLDVPKFKSVQPPSLPLSPSPISPSSYLAFPSGFSPTEFLSSPLFLSSPNIFASPTTEAFAGFNWKNSLGEDQVRDKEDEKNYSDFSFQTQTKPASVFQSSSSMFQMQEPLKKQHIWKFNEPAKQTDYSSTKSEHPSSTQSFTSEMAPSKPEIQSNSGAGSGHFNYTNTSQSVREQRRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSMKKKVERSLVDGQITEIVYKGNHNHAKPQSTRRTSSQPIHQPSSSCTNSGISDQSVVTLGNPQMEPVSIQEDSSASVGEEDLEQTSQTSYSGGDEVDLGPEAKRWKEDNENDGYSASGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSASYNMNRNSLNSNTGNVPAPIKPSAVSCYSSSSSFTNSLYNTRPSITGNQESFPLDMLKGTGNFGNPALGRSMGSYANHSQYSDAAYPKAKDERNEDSFLQSFLSKDFQI* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02049 540 ProSiteProfiles WRKY domain profile. 190 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g02049 540 ProSiteProfiles WRKY domain profile. 360 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g02049 540 Gene3D WRKY domain 352 418 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g02049 540 MobiDBLite consensus disorder prediction 251 320 - -
Rops8g02049 540 MobiDBLite consensus disorder prediction 246 349 - -
Rops8g02049 540 MobiDBLite consensus disorder prediction 1 34 - -
Rops8g02049 540 SUPERFAMILY WRKY DNA-binding domain 191 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g02049 540 SMART WRKY_cls 195 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g02049 540 SMART WRKY_cls 365 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g02049 540 MobiDBLite consensus disorder prediction 324 340 - -
Rops8g02049 540 Gene3D WRKY domain 181 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g02049 540 FunFam WRKY transcription factor 33 352 418 - -
Rops8g02049 540 MobiDBLite consensus disorder prediction 134 223 - -
Rops8g02049 540 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 61 442 IPR044810 GO:0003700
Rops8g02049 540 MobiDBLite consensus disorder prediction 139 189 - -
Rops8g02049 540 FunFam WRKY transcription factor 184 256 - -
Rops8g02049 540 Pfam WRKY DNA -binding domain 366 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g02049 540 Pfam WRKY DNA -binding domain 196 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g02049 540 SUPERFAMILY WRKY DNA-binding domain 357 425 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02049 Rops-Chr8 47798360 47801261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02049 18 534 WRKY Transcription Factor Family AT2G38470 45.620 4.93e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops8g02049 WRKY 1.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02049 K13424 - gmx:100792833 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02049 8 47798360 47801261 Rops8g02049 8 47798360 47801261 ECH