Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02039 ATGGGTAGCTGTTGTAGCCACGATGTTTCGGTTCGCGGCAAGGTGGAAAGCGAGGTGGATGATGGAGAATATGAGTATGATCACGAGGATATTAATGATGTCTCGTATGAACGTGGTGGAGCAATGATAAGGTTAAGAGGATCATCTAGGTTTGTATCAATGTACACCCAACAGGGTAAGAAAGGTGTGAACCAAGATGCAATGACAGTTTGGGAGGACTTCACTGGAGAAAAAGATGGGATCTTTTGTGGTGTGTTCGATGGTCATGGTCCTCTAGGGCACAAGGTTTCACAATTTATTCGTGACAATCTACCCTCAAAACTGTCTGCAGCAGTCAAAATGTCACAAAAGAAGGCCAGCAAATATTATGATGCTATTGATTCAGAAACTGCCAGTTTTGATGAAGTCTATGATGATGATAATAACCACAGCATGTCCCTTGCTTCATGGGAGGGTTGCTTTCTGAAATCCTTTGATGAGATGGATGATCACCTTGCTCAGGAAATTAACATGGACAGCTATTGTAGTGGTTGCACAGCTGTAACTTTAATTAAACAGGGTGACCGGTTGATAGTTGGCAATTTGGGTGATTCTCGTGCAGTTCTTTGCACAAGGGATAGAGACCAACTTATTCCTGTTCAACTTACTGTTGACTTGAAACCAGATATTCCAAGTGAAACTTCAAGAATCCTTAACTGTGAAGGAAGAGTTTTCGCTGCAGAAGAAGAACCAGATGTATACAGAATCTGGATGCCTGATGATGACTGCCCTGGATTAGCTATGTCAAGAGCCTTTGGAGACTTTTGCCTGAAAGATTATGGCCTCATTGCAGCTCCTGATGTATTCTATAGAAAAATTACAAGGCAAGATGAATTTGTGGTTTTGGCAACTGATGGGGTATGGGATGTACTCTCTAATGATGAAGTAATAAACATAGTTGCTTCAGCACCAAGGAGGTCCATAGCAGCCAAATTGCTAGTAAAGCGTGCTGTTAGAGCCTGGAGAATCAAGTATCCTGGTTCCAAGGTTGATGATTGTGCAGTCATATGCTTGTTTCTGGATGATAAGCCTGTTTTATCCCATTCTCAGTCCAATGTGATGAGAAAAAGTAGACACCGCAAATCATATAGAAATGAAGACACTGAAACTGTGGATGGCAAGGTTGGGGTAGAACTTGATGAAGAATGGAAAGCTCTTGGAGGGTTAGTGAGAGCCAACTCTATATCAAAACTTCCACGGCTCCCTAGGAATACCAGTAAACGGCAATCATCCAAGCACCATAGGGGGAGTTGA 1293 0.4246 MGSCCSHDVSVRGKVESEVDDGEYEYDHEDINDVSYERGGAMIRLRGSSRFVSMYTQQGKKGVNQDAMTVWEDFTGEKDGIFCGVFDGHGPLGHKVSQFIRDNLPSKLSAAVKMSQKKASKYYDAIDSETASFDEVYDDDNNHSMSLASWEGCFLKSFDEMDDHLAQEINMDSYCSGCTAVTLIKQGDRLIVGNLGDSRAVLCTRDRDQLIPVQLTVDLKPDIPSETSRILNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLIAAPDVFYRKITRQDEFVVLATDGVWDVLSNDEVINIVASAPRRSIAAKLLVKRAVRAWRIKYPGSKVDDCAVICLFLDDKPVLSHSQSNVMRKSRHRKSYRNEDTETVDGKVGVELDEEWKALGGLVRANSISKLPRLPRNTSKRQSSKHHRGS* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02039 430 PANTHER PROTEIN PHOSPHATASE 50 351 IPR015655 GO:0004722|GO:0006470
Rops8g02039 430 Pfam Protein phosphatase 2C 76 330 IPR001932 -
Rops8g02039 430 CDD PP2Cc 50 353 IPR001932 -
Rops8g02039 430 SMART PP2C_4 42 351 IPR001932 -
Rops8g02039 430 ProSiteProfiles PPM-type phosphatase domain profile. 51 353 IPR001932 -
Rops8g02039 430 Gene3D - 45 355 IPR036457 -
Rops8g02039 430 MobiDBLite consensus disorder prediction 410 430 - -
Rops8g02039 430 SUPERFAMILY PP2C-like 46 355 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02039 Rops-Chr8 47708827 47711246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02039 1 357 PP2C-type Phosphatase Gene Family AT5G01700 53.740 1.41e-136 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02039 - - gmx:100783603 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02039 8 47708827 47711246 Rops8g02039 8 47708827 47711246 ECH