Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02029 ATGAAGACTGATACTCTTTCTGGAGATAGGAAATCACGCAAGAGACCCAATAGAGGAAGAAGTGACTTAGTTGAAGACACACTTGAGAAGTGGAAGAAGTATAACAAGCAACAACAACTTGGTTCTGGAGAAAATGGGGTGGAAGTGATTCACAAAGTTCCTGCAAAGGGCTCAAGAAAAGGGTGCATGAGAGGTAAAGGTGGTCCTCAAAATTCTGATTGCAAGTTCAGAGGTGTGAGACAGAGGATTTGGGGCAAGTGGGTAGCCGAGATTCGTGAACCTATCAATGGTAAGCATGTTGGTGAGAAAGCACATAGGCTTTGGCTTGGTACTTTCTCAACTGCACTTGAAGCTGCACTTGCTTATGATAAAGCAGCTAGAGCCATGTATGGCCTTTCTGCCCGGTTGAATTTTCCTGATTCTAATGTGGACTCAATGGATTCTAATGGATCATCATCTAGTGCATGTGATGAAAAATCACCAAGTGGTTCTGCAGACACTTTGAATGATGGTGGTGGTGATGATCTAGCAAAAGCTGAGGAGTTGGAGGGGAATCTTCATCAGTCTCATGAAGAAAAACTCAAATTTTCTGAGGTTGATGTTTTTGAAGAAACTGAAGAGAAAAATGTTCTTTCCAAAATTTGTGTGGCTGATGATTCGGTAGAGGAGTTGAAGGAAGTGACAACATGTCAAACATATGAGAAATGTAAGAATAGAATTCATGAAGGGTGTTTCAAGAATGTTAAGGCTGAAATTTCTGGAGAAAATGAAGGAATTGACAGTGAATCAGAGGAGTTTATGAAAAAATCTGGCATAGGTGAAGAGTGTAATCATGTGCAGAAGGAGCCTATGAATTTAGCCATGAATACAGGAGCTGATTATAGCTCTTCTGATACAACAGAACATGAGATTCTGGTGAAGGGTGAAGAAACAACAGGTGAATCGATGGAAACTTTGAAATCCTGTGAGTTGAGCTTCAGCAATAATTGCCTTGGATACATGCATAATATGCTGCCAGATAGCAATTCAAGACCAAATTCTGAGCATTTTAATCACATCCAACCTGAGGAATCTCTTCCAAAGAAACAAAGGAAAGAAGTAATTTCTGAAATCCGGGAACTTTGCAACAGCAAGTGCAATCATGTTCAGTCACAAAATGAGCAACATATAAAAAATCAACATTTTGATGAGGTGAAAACTGAGCTTAATGGTTTGGAATGCAAGCTGAGAACCCATTCTATTGATTGCAACAACAAGGAGGCACACATAGTAGAGGATTCCAACCGTACCATGCAGGGAATTCATGTCTTTGGTGGTGGCACTGTTGGACCAATAATGTCTGAAGTTGAGACTTTGAACATCAATAATACTAATAGAAACTCTAAATTTCAAGAGAAAGGAAATAATAGGAAGCTGTGTGATCTTTCTCAACAGCTACATAAATTAGGTGGTTACTGGAATAACATGCAGTTAGCAGACCTGGAAGTGGGTTATGATTATAGTTTCTTAAGTCCTGATTATGATTTTGGCTTATTAGAAGAACAGAAGTTACTAGATATATGTTTTTCACATATAGGATCTTAG 1584 0.3908 MKTDTLSGDRKSRKRPNRGRSDLVEDTLEKWKKYNKQQQLGSGENGVEVIHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKHVGEKAHRLWLGTFSTALEAALAYDKAARAMYGLSARLNFPDSNVDSMDSNGSSSSACDEKSPSGSADTLNDGGGDDLAKAEELEGNLHQSHEEKLKFSEVDVFEETEEKNVLSKICVADDSVEELKEVTTCQTYEKCKNRIHEGCFKNVKAEISGENEGIDSESEEFMKKSGIGEECNHVQKEPMNLAMNTGADYSSSDTTEHEILVKGEETTGESMETLKSCELSFSNNCLGYMHNMLPDSNSRPNSEHFNHIQPEESLPKKQRKEVISEIRELCNSKCNHVQSQNEQHIKNQHFDEVKTELNGLECKLRTHSIDCNNKEAHIVEDSNRTMQGIHVFGGGTVGPIMSEVETLNINNTNRNSKFQEKGNNRKLCDLSQQLHKLGGYWNNMQLADLEVGYDYSFLSPDYDFGLLEEQKLLDICFSHIGS* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02029 527 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Rops8g02029 527 MobiDBLite consensus disorder prediction 341 363 - -
Rops8g02029 527 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Rops8g02029 527 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Rops8g02029 527 MobiDBLite consensus disorder prediction 141 167 - -
Rops8g02029 527 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 298 - -
Rops8g02029 527 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Rops8g02029 527 MobiDBLite consensus disorder prediction 1 26 - -
Rops8g02029 527 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Rops8g02029 527 SUPERFAMILY DNA-binding domain 75 141 IPR016177 GO:0003677
Rops8g02029 527 CDD AP2 74 141 IPR001471 GO:0003700|GO:0006355
Rops8g02029 527 MobiDBLite consensus disorder prediction 141 176 - -
Rops8g02029 527 FunFam Ethylene-responsive transcription factor 2 74 140 - -
Rops8g02029 527 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02029 Rops-Chr8 47473325 47475406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02029 1 170 AP2-EREBP Transcription Factor Family AT2G40340 51.724 4.93e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g02029 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02029 - - aprc:113861479 671.389