Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01998 ATGAAAGACGTGGAAGGCACTTGCAGTGGTCAACACGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATGAAGAAAAAGTGGGAATACAGTGTGGGGTTTCATCATGGAGAGACTCTAATATTTGATATAGTAAAAAACGAATGGTCTGTGGCAATTGCTTCACCTCCATCTTCTATTACTACCAACAAGGGTTTCTGCTACGAAGGAGAACGAGGACGCGGAGCAACTGTTGCAGCAGCAGCAGAAGCAGAAGCCATGGTTCTCAAGACGGAACTTTGTCGTTTCAGTGGGGCAAAGATCTACCCTGGGAGAGGCATCAGATTTGTTCGTGGTGATTCTCAGGTCTTCCTATTTGCCAATTTGAAATGCAAAAGGTATTTCCACAACTGGTTGAAGCCATCAAAGCTCACCTAG 417 0.4508 MKDVEGTCSGQHGFVVAVTGIENMKKKWEYSVGFHHGETLIFDIVKNEWSVAIASPPSSITTNKGFCYEGERGRGATVAAAAEAEAMVLKTELCRFSGAKIYPGRGIRFVRGDSQVFLFANLKCKRYFHNWLKPSKLT* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01998 138 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 92 137 - -
Rops8g01998 138 CDD Ribosomal_L24e_L24 89 138 IPR000988 -
Rops8g01998 138 SMART 4TRASH 94 132 IPR011017 -
Rops8g01998 138 Gene3D Ribosomal protein L24e 89 138 IPR038630 -
Rops8g01998 138 PANTHER 60S RIBOSOMAL PROTEIN L24 90 138 IPR000988 -
Rops8g01998 138 ProSitePatterns Ribosomal protein L24e signature. 96 113 IPR023442 -
Rops8g01998 138 FunFam 60S ribosomal protein L24 89 138 - -
Rops8g01998 138 Pfam Ribosomal protein L24e 90 137 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01998 Rops-Chr8 45933625 45934041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01998 87 137 Cytoplasmic Ribosomal Protein Gene Family AT3G53020 88.235 3.47e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01998 K02896 - gmx:100499884 103.99