Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01995 ATGTGTCAATTGAGTGAGATGCGGATGAGATATTTGTTGTACCACTCGGGCCTTGCTGTGAATGGAAGTGAGGGTTGTTGGTACAATGTTAGAAACGTGGTGTTTGAGGAGCGTACTCGAGAAGTTGATTACACTAGAAAATCGGTTACAGAAAATACTCGTGCTTCTTATCCTATAGAGGTCATTCCAAATGCAAAGTTACCATGTGTTGGCCCTCACCCATCAAATGTCATACTTTTGGCATGTGACGCATTTGGTGCGCTACCACCCGTGAGTAAGCTAAATCTGGCACAAACCATGTATCATTTCATCAGCAAATATACTGCTTTAATGGCTGGCACAAAGGATGGTATTAAGGAGCCACAAGTAACTTTTTTGGTTTGTTTTGGTGCAGCATTTACAATGTTACACCCTACAAAGTATTCAACAATGCTTGCTGAAAAAATAGAGAAGCATGGTGCTATCGGGTGGCTTGTTAACACTGGTTGGTCTGGTGGCAGCTATGGTTCTGGCAGCTGCCTTGAACTACAAGAGCTGCATGACGTAAAACCACTTTACAAATATCTTCATGCCACCCAACCCCACCTTTTGCACAAACTCTTCATCAATGATATTGTTAACCCAAACCCTGGAACGTTGAGATATGCAGTGATAGAGAATGAGCCATTGTGGATCGTGTTCCCAAGTAATATGATGATAAAGCTGTCTCAGGAACTGATATTTAACAACTACAAGACCCTAGATGGGCGTGGTGCTGATGTTCACATTGTGGGAGGAGGGTGCATCACTTCACGATATATAAGCAATGTCATCATTCACAACATTCACATCCACCATTGTCATCCCTCAGGTAACACAAGCGTGAGGTCAAGCCCAGAGCATTACGGTTGCACAATAAAATCAGACGGAGACGACATATCCATATCCGGATCCAAGGACATGACCACTGCACCCTCTCTATTTGCAAGGATGGACTCATAG 981 0.4343 MCQLSEMRMRYLLYHSGLAVNGSEGCWYNVRNVVFEERTREVDYTRKSVTENTRASYPIEVIPNAKLPCVGPHPSNVILLACDAFGALPPVSKLNLAQTMYHFISKYTALMAGTKDGIKEPQVTFLVCFGAAFTMLHPTKYSTMLAEKIEKHGAIGWLVNTGWSGGSYGSGSCLELQELHDVKPLYKYLHATQPHLLHKLFINDIVNPNPGTLRYAVIENEPLWIVFPSNMMIKLSQELIFNNYKTLDGRGADVHIVGGGCITSRYISNVIIHNIHIHHCHPSGNTSVRSSPEHYGCTIKSDGDDISISGSKDMTTAPSLFARMDS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01995 326 Gene3D Phosphoenolpyruvate Carboxykinase, domain 2 27 62 - -
Rops8g01995 326 Gene3D - 63 186 IPR013035 GO:0004611|GO:0006094|GO:0017076
Rops8g01995 326 SUPERFAMILY PEP carboxykinase-like 29 177 - -
Rops8g01995 326 PANTHER PHOSPHOENOLPYRUVATE CARBOXYKINASE ATP 31 177 IPR001272 GO:0004612|GO:0005524|GO:0006094
Rops8g01995 326 PRINTS Pollen allergen Amb family signature 238 254 IPR018082 -
Rops8g01995 326 PRINTS Pollen allergen Amb family signature 202 227 IPR018082 -
Rops8g01995 326 PRINTS Pollen allergen Amb family signature 302 323 IPR018082 -
Rops8g01995 326 Gene3D - 230 314 IPR012334 -
Rops8g01995 326 Pfam Phosphoenolpyruvate carboxykinase 31 177 IPR001272 GO:0004612|GO:0005524|GO:0006094
Rops8g01995 326 SUPERFAMILY Pectin lyase-like 202 314 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01995 Rops-Chr8 45913293 45914758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01995 203 314 Polysaccharide Lyase AT3G53190 79.464 1.25e-47 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01995 K01610 - mof:131150577 246.514