Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01969 ATGATGCAGCAAGAGATTCTTCAGTCCCCTTGGTCATTCCATGAAGACATGGACTCAACTTTTGATCCAGTTGTTGAGCCCTATGGCTTCACCATGGTTGACCATGTTGGTGACTTTGAGCCATATATCATCATCATGGATGACCATGTTGGTGATTGTGAATTTGGTTCTCTTTTGAGCACTCCAGATAACACTGTTTCTGAAATTTGTTCCATCCCTTTTCCTTCCACCATATTCACCACCAATGATCATATTCAATATCCAATTGATGATGAAACTTCCCAACTCCCATCACTGATGGAATTGGATGGTTTTGATTCCATCCTGAGTGCCCAAGTTGTAGGTATTCATGGACTTGAATACCAAGAAGAGAGTGAAGGGAGCTTCCCTTCACAGAATTTGTCTAGTGAGGTGGAAAATGTATGGAGTCCTACCCAATCAGTGAAGTCAGAGTTGTCCTCAATTCAACCATCACTGATTTTGCCACAAGAAGACATGGAAATTGACAACCAAGTGAGCCTTCCACACCTGATGGAGGCCCTTGGAGAAGCCATGGAGCAAGGACAGAAAGTACTAGCTGAAGTGATCTTGAAGTCCATAAGCCAGAAAGTTAGTCCACTTGGTGAATCTCTTGACCGCCTTGGTTTCTACTTGTCTCAAGACATGACTAATCATGGAGATTATCTCAAAGGTGAGGCCTTCAAGAACTTTGAGGCTTCTTTGAGGGCATTCTATCCAGGGATCCCAAATGGAAAAGTTGCTCACTTTGCAGCTATTTCAGCAATTCTTGAAGCTATACCAAATGATTGTGATGTCGTACACATAATAGACTTTTGTATGGGACATGGGATTCAGTGGCCACCACTATTTGAGGCCATTGCTCACTTGAATAAAACATTGAAATTGACATCAATCAAATGGGGTGATGAAAGCCCTGAATGTATTTCCATTTTTGAGCAAACCAGAAGGCAGCTCCATGAGCATGCCACATCATGTGGTTTGAAATTGGAGGTGGAGGAAAAGGGAGTTGAGGAACTGGTTACTGAGATAGAAAAAATTAACAAAAGGGGTGGGAGGAGAGAGTTTTTGGCCTTCAATTGCATGCTAGGCCTTCCTCACATGGGAAGGGTAAGAAGCAAAAGACAACATGCCTTGAAGTTTCTAAAAGTAGCTGAGGATTTGATCAACAGCTCTGGCAGCAAGGGAATCATCACTTTTGGGGATGGTGATGCATTTGAGAAATTGAAAAATAGCTTGAATTTCAGGTCATTCTTTGAAGGGCATTTGGTGCATTACCAGGCCTTGTTGGAATCAATTGAATCACATTTCACAGCTCATTTCTCAGAAGCAAGAACTGCCATTGAAGTGCTATTTGTAGCACCTTGTATCTCTTCTCTTGCTTGGTTACAAACATGGGAGGAGATGAAAATGGATTGCCATCTTCAGACAGAGAATAGCATAGAGGGTTGCAGATTGAGCAAAAACATTTTAATGGAAGTCAGAGAAATGTTGAGAGGAAGTGAAGGTTCATATCAGGCCAGGATTGAAGGGCAAAATGACAATGAACTTGTTTTGGAGTGGAAAGGAACCCAACTATTAAGAGTTTCAGTTTGGAAAAACTGA 1623 0.4184 MMQQEILQSPWSFHEDMDSTFDPVVEPYGFTMVDHVGDFEPYIIIMDDHVGDCEFGSLLSTPDNTVSEICSIPFPSTIFTTNDHIQYPIDDETSQLPSLMELDGFDSILSAQVVGIHGLEYQEESEGSFPSQNLSSEVENVWSPTQSVKSELSSIQPSLILPQEDMEIDNQVSLPHLMEALGEAMEQGQKVLAEVILKSISQKVSPLGESLDRLGFYLSQDMTNHGDYLKGEAFKNFEASLRAFYPGIPNGKVAHFAAISAILEAIPNDCDVVHIIDFCMGHGIQWPPLFEAIAHLNKTLKLTSIKWGDESPECISIFEQTRRQLHEHATSCGLKLEVEEKGVEELVTEIEKINKRGGRREFLAFNCMLGLPHMGRVRSKRQHALKFLKVAEDLINSSGSKGIITFGDGDAFEKLKNSLNFRSFFEGHLVHYQALLESIESHFTAHFSEARTAIEVLFVAPCISSLAWLQTWEEMKMDCHLQTENSIEGCRLSKNILMEVREMLRGSEGSYQARIEGQNDNELVLEWKGTQLLRVSVWKN* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01969 540 Pfam GRAS domain family 177 539 IPR005202 -
Rops8g01969 540 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 151 532 IPR005202 -
Rops8g01969 540 Coils Coil 336 356 - -
Rops8g01969 540 ProSiteProfiles GRAS family profile. 165 539 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01969 Rops-Chr8 45069702 45071324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01969 143 294 GRAS Transcription Factor Family AT1G66350 30.128 2.32e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops8g01969 GRAS 1.5e-36 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01969 - - gmx:100784347 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01969 8 45069702 45071324 Rops8g01969 8 45069702 45071324 ECH