Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01963 ATGGATATGAGGATGGAAGAAAGACATGACTCGGAATGTTCCAAAACAAGCCCTTCTAATGAAGATGGTTGTGAAATTAGTGAGGCCAATGAAGATGAAAGTAAGCAAAACAACAATAATGGAGGAAGCTCAAGCAACAGCACAGTGGAAGAGAATGAGAAGAAGACATCAGTGAGACCTTATGTTAGATCCAAGTTGCCTAGGCTACGTTGGACACCTGATCTTCATCTTCGATTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTGGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAAAGTCACTTACAGATGTACAGGAGCAAGAAGATTGTTGACAGCAATCAAGTATTGGCTGATCAAAGGCTTCTTGTGGAAGGTGGAGACAGAAATGTTTTTAATCTCAGTCAACTTCCCATGCTTCAAGACTATAATCCAAGCCAAAGTTCAGCATATAGAGGTGGATATGGGGAGCCTTCTCTTGCCATGTATGAAAACATGGTACATAGGCCTTTCATGGTTCGGGGTTCAATAGATGAATCTGGAGCTGAATTTTATAGCAGAATGAGTGAGAGGATCCATGGGACCACCAATAGTAACATCAATTGGACTAATAGCATTTTCCGAGTGGATTCTTCCAATTTTAGTGAAGTATCAACCAGTAAAGTCCATGAACCAAAAGATAAATTCCTCTCATTTGGTGGCAATGAATCAATATGCACACAGATCAGGTTGAGCCAGATTGATCTCAATCCATCAACACAAGTGCAACCAAATCCACCAGAGCTCATGCCTAATAACAAGTTGCAAGCAAATCCAGTGGAACTAAAGACTTTGAAAAGAAAGGCTTCAGATATTGACCTTGATTTGGATCTGTCACTTAAATTAAAATCAAGGATCAGTGCTGAGAATCAAGGAAGCATAGAAGACCATAAAGTTGATAGCAATCTATCGCTCTCTTTGTATTCTCAATCCTCCTCCTCTTACCTTAGCAACAAGTTGAAAGAAGGACAAGATCATTCTAAGGAGCAAAGGAAAAGAGCCAATGCATTGGATCTGTATATATGA 1104 0.3976 MDMRMEERHDSECSKTSPSNEDGCEISEANEDESKQNNNNGGSSSNSTVEENEKKTSVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKIVDSNQVLADQRLLVEGGDRNVFNLSQLPMLQDYNPSQSSAYRGGYGEPSLAMYENMVHRPFMVRGSIDESGAEFYSRMSERIHGTTNSNINWTNSIFRVDSSNFSEVSTSKVHEPKDKFLSFGGNESICTQIRLSQIDLNPSTQVQPNPPELMPNNKLQANPVELKTLKRKASDIDLDLDLSLKLKSRISAENQGSIEDHKVDSNLSLSLYSQSSSSYLSNKLKEGQDHSKEQRKRANALDLYI* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01963 367 FunFam Myb family transcription factor 65 123 - -
Rops8g01963 367 Gene3D - 66 123 - -
Rops8g01963 367 MobiDBLite consensus disorder prediction 347 361 - -
Rops8g01963 367 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 43 211 IPR046955 GO:0003700
Rops8g01963 367 MobiDBLite consensus disorder prediction 344 367 - -
Rops8g01963 367 SUPERFAMILY Homeodomain-like 66 121 IPR009057 -
Rops8g01963 367 MobiDBLite consensus disorder prediction 1 16 - -
Rops8g01963 367 MobiDBLite consensus disorder prediction 1 61 - -
Rops8g01963 367 Pfam Myb-like DNA-binding domain 69 119 IPR001005 -
Rops8g01963 367 MobiDBLite consensus disorder prediction 33 51 - -
Rops8g01963 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 123 IPR017930 -
Rops8g01963 367 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 122 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01963 Rops-Chr8 44961800 44963422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01963 58 123 G2-like Transcription Factor Family AT2G42660 81.818 7.45e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops8g01963 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01963 - - gmx:102662997 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01963 8 44961800 44963422 Rops8g01963 8 44961800 44963422 ECH