Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01962 ATGGCCTCTCCCTCGGCCTATGAACAATTCTCCCCTGCATCACCTGATTGGTTAAACAAAGGGGACAACGCATGGCAGATGACAGCAGCAACTTTGGTTGGTCTTCAAAGCATGCCAGGGCTTGTGATTCTCTATGCAAGCATAGTGAAGAAGAAATGGGCAGTGAACTCAGCTTTCATGGCTCTTTATGCCTTTGCAGCTGTTCTCATATGTTGGGTACTTGTAGGCTACCGCATGGCCTTTGGAGAGAAACTTTTACCCTTTTGGGGTAAGGGTGCACCAGCACTAGGCCAAAAGTTTCTAGCAAAACAAGCCAAAGTACCTGAAAGCACACACCACTATGACAATGGTACTGTTGAAACCCCAACAGAGACACCCCTTTTTCCTATGGCTTCACTTGTCTATTTCCAATTCACTTTTGCTGCTATTACCATGATCTTGTTAGCTGGCTCTGTTCTTGGCCGAATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGCTTATCTTTTCATACACTGTTGGTGCCTTTAGCCTCTGGGGTGGTGGTTTTCTTTATCATTGGGGTGTCATAGATTACTCTGGTGGCTATGTTATTCACCTCTCCTCTGGAATCGCTGGCTTCACCGCTGCTTATTGGGTTGGACCAAGGATCAAGAGTGATAGGGAGAGGTTCCCACCAAACAACGTGCTGCTTATGCTTGCAGGTGCTGGGCTGCTATGGATAGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCAAACATTGCATCTTCTATAGCCATGTTGAACACCAATATTTGTGCAGCCACAAGCCTCCTTGTGTGGACTTCTCTTGATGTCATCTTCTTTGGGAAACCATCAGTGATTGGAGCTGTTCAAGGCATGATGACTGGACTTGTATGCATCACCCCAGGAGCAGGGCTTGTGCAATCATGGGCGGCTATAGTGATGGGAATCCTATCTGGGAGCATTCCATGGGTCTCCATGATGATCCTGCATAAAAAGTCAAGCCTGCTTCAACAGGTAGATGACACCCTTGGTGTATTTCACACACATGCTGTGGCTGGCCTTTTGGGTGGTCTCCTCACAGGTCTATTAGCAGAACCAGCACTTTGTAGACTATTATTACCAGTGACAAACTCAAGGGGTGCATTCTATGGAGGAGGTGGTGGAATACAATTCTTGAAGCAAATGGTTGCTGCCTTGTTCATTATTGCATGGAACGTAGTCTCCACCACCATCATTCTCCTTGTCATACAATTGTTCATACCCTTGAGGATGCCGGACGAGCAGCTTGAAATCGGCGACGACGCCGTCCACGGTGAGGAAGCTTATGCCCTTTGGGGTGATGGAGAAAAATATGACCCAACAAGGCATGGTTCATTAAACACTGGCAACACTACAGTTTCACCTTATGTTAATGGTGCAAGAGGTGTGACTATAAATTTGTGA 1461 0.4695 MASPSAYEQFSPASPDWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGYRMAFGEKLLPFWGKGAPALGQKFLAKQAKVPESTHHYDNGTVETPTETPLFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWIGWSGFNGGAPYAANIASSIAMLNTNICAATSLLVWTSLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVSMMILHKKSSLLQQVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRLLLPVTNSRGAFYGGGGGIQFLKQMVAALFIIAWNVVSTTIILLVIQLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGEKYDPTRHGSLNTGNTTVSPYVNGARGVTINL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01962 486 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Rops8g01962 486 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Rops8g01962 486 SUPERFAMILY Ammonium transporter 17 430 - -
Rops8g01962 486 FunFam Ammonium transporter 6 451 - -
Rops8g01962 486 NCBIfam ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Rops8g01962 486 Gene3D Ammonium transporter AmtB like domains 2 451 IPR029020 -
Rops8g01962 486 PANTHER AMMONIUM TRANSPORTER MEP2 8 458 IPR001905 GO:0008519|GO:0016020|GO:0072488
Rops8g01962 486 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005886
Rops8g01962 486 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005886
Rops8g01962 486 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005886
Rops8g01962 486 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005886
Rops8g01962 486 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01962 Rops-Chr8 44941502 44945409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01962 130 486 Inorganic Solute Cotransporters AT2G38290 77.437 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01962 K03320 - gmx:100790119 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01962 8 44941502 44945409 Rops8g01962 8 44941502 44945409 ECH