Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01960 ATGGAGTGCATTCCTGCTGGTAACAACACTACCTCTTCTGCAGGGTCATCTTCCAAGCCAAACAAGAGCAAGGAGAAAAAGGGTGTGAAGAAAAGCAAGGGAGTAATGAAGCTTTCCACTGACCCACAAAGTGTAGCAGCCAGAGAAAGAAGGCATAGAATCAGTGACAGGTTCAAGATCCTGCAAAGCATGGTCCCTGGAGGGAGTAAGATGGACACAGTTTCTATGTTGGAGGAAGCCATTCACTATGTGAAGTTCCTCAAGACTCAGATTTGGCTTCATCAAACCATGATAAACTTTGTAGATGATGAGTCATCCATGTTCCTTCCTGTGGATTATTTTCCTGATGAACAGAACTTTTCCCTTCAGCAAAACCCTTCAGTTTCAGTAGATTCTGTGCACACTCTACCACAGCTACCACTAGACCAGTTCTGCTTCCAAGGTGAAGAAGATACAACCTTTGATGCCACTAGGAACTATTGGTCAGCTTAG 492 0.4431 MECIPAGNNTTSSAGSSSKPNKSKEKKGVKKSKGVMKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQIWLHQTMINFVDDESSMFLPVDYFPDEQNFSLQQNPSVSVDSVHTLPQLPLDQFCFQGEEDTTFDATRNYWSA* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01960 163 MobiDBLite consensus disorder prediction 1 47 - -
Rops8g01960 163 FunFam Transcription factor LAX PANICLE 41 104 - -
Rops8g01960 163 CDD bHLH_AtIND_like 39 98 - -
Rops8g01960 163 Gene3D - 42 96 IPR036638 GO:0046983
Rops8g01960 163 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
Rops8g01960 163 SMART finulus 44 93 IPR011598 GO:0046983
Rops8g01960 163 Pfam Helix-loop-helix DNA-binding domain 48 87 IPR011598 GO:0046983
Rops8g01960 163 MobiDBLite consensus disorder prediction 1 19 - -
Rops8g01960 163 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 100 IPR036638 GO:0046983
Rops8g01960 163 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 143 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01960 Rops-Chr8 44893750 44894343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01960 36 111 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.778 4.26e-21 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g01960 HLH 5.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01960 - - gmx:113000114 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01960 8 44893750 44894343 Rops8g01960 8 44893750 44894343 ECH