Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01956 ATGGCTTCAGGGGCAATTTTCTCGTCGTTACGGCGGAGAAGGTCGCCGACGTTGGAAGCTTTTCTCGCCCCCGTTGACTTAAGCGACATCGCTTTGGTTCAGACCCTTGTATCGGTGGCAAACGAGCTTGTTTCGTGTTTTTCAAAGCGTACCTTCTTCTTTCAACGGAAGAATTCACGGTCTCTGATCAGAAAAGTTGAGATTTTTCAGTCGCTTTTGGAGTATTTAAGCGATTCTGGTGGCGCGTGTCTTCCACCTACCGCGGTGCTTTGTCTTAAGGAGCTTTACCTGTTGCTGTACCGGTCCAAGATTCTTCTTGATTATTGCGATCAATCGACTAATGGTTCACAATCTGGAAAGACTGTGGCTGCTCGGGAGATACGATTGCTAGCGAAAACCGGCAAAGAAAATCGTGCCTTCATTGCAGAAGCAGGTGCAATTCCTTATCTGCGGAACTTGCTTTCATCGTCCAATGTTGTTGCTCAGGAGAATTCTGTAACTGCATTGCTCAACCTATCCATCTTTGACAAGAACAAAAGTCGGATCATGGATGAAGAAGGGTGTCTTGGATCAATTGTTGATGTGTTGAGATTTGGACACACAACTGAGGCAAGGGAAAATGTCAGCCGCAACATTGTTCAAATTCTATCACCATCCATGACTATAAGAAAATAA 675 0.4519 MASGAIFSSLRRRRSPTLEAFLAPVDLSDIALVQTLVSVANELVSCFSKRTFFFQRKNSRSLIRKVEIFQSLLEYLSDSGGACLPPTAVLCLKELYLLLYRSKILLDYCDQSTNGSQSGKTVAAREIRLLAKTGKENRAFIAEAGAIPYLRNLLSSSNVVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGHTTEARENVSRNIVQILSPSMTIRK* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01956 224 SUPERFAMILY ARM repeat 54 217 IPR016024 -
Rops8g01956 224 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 187 IPR000225 GO:0005515
Rops8g01956 224 PANTHER U BOX DOMAIN-CONTAINING 70 213 - -
Rops8g01956 224 Gene3D - 103 224 IPR011989 -
Rops8g01956 224 Pfam Armadillo/beta-catenin-like repeat 135 173 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01956 Rops-Chr8 44824526 44825516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01956 104 209 U-box Gene Family AT1G29340 67.925 7.48e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01956 - - gmx:100811153 184.111